| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1507 |
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| Symbol | |
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| ID | 4077063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1612226 |
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| End bp | 1614916 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006820 |
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| Product | periplasmic sensor signal transduction histidine kinase |
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| Protein accession | YP_613502 |
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| Protein GI | 99081348 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.808684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGC TCAACCTTCT GGCAGTCGTG AGCATTGGCT ATGTGGCCCT GCTGTTCATG
GTGGCCTTTT GGGCGGACCG GCAGGCGCTG CGGGGGCGCA GCGCGCGCTT TATGCGCTCG
CCACTGATCT ACACGCTGTC GCTGTCGATT TACTGCACGG CCTGGACGTT TTACGGCGCA
GTTGGCTATG CGGCGCGCTC CGGCATGGAA TATGTCACCA TCTATCTGGG GCCGACCCTG
GTGATGATCG GCTGGTGGTG GGGACTGCGC AAACTGGTGC GGGTCGGGCG CAGCCAGCGC
ATCAGTTCGA TTGCCGACCT GCTCTCGGCG CGATACGGCA AATCCAACGT GCTGGCCATC
GGAGTCACGG TGCTCGCGGT TGTGGGGGTC ACGCCCTATA TTGCGCTGCA ATTGCAATCT
ATCACCCTTT CGGTCGCGAT CTTTGCCGAG GCCGACCCCT CTCGCGGCCA CAATGAATCC
GGCACGGTGT TCTGGATTGC GATGGGCCTT GCCTGTTTTG CCATCCTCTT TGGGACGCGC
AACCTCAACG CCAACGAGCG CCACCACGGC GTCGTCATGG CCGTCGCCCT TGAGGCGGTG
GTCAAGCTCA TTGCGCTGGT GGCGGTGGGC GTGTTCGTGG TCTGGGGCAT CGCTGGCGGG
ATCGAGGAAA CTCTTGCCCG CATCGACCGC TCTCCCATCG GGCATTGGCA GGTGGACGGC
GGGCGCTGGA CGGCGATCAC CTTTCTGGCA GCGGCGGCCT TTGTCTGCCT GCCGCGCATG
TTTCAAGTGA TGGTGGTGGA GAACGAGGAC GAACGCCACC TACGGGTCGC GGCCTGGGCC
TTTCCGACTT ATCTCCTGCT CATTTCGATC TTTGTGGTGC CAATCGCGGC GATCGGGCTT
GAGCTTTTGC CGCAGGGCTC CAATCCGGAC CTCTTTGTGC TCGCCTTGCC CCTGTCCCAA
GGGCAGAACG GTCTGGCCAT GCTGTCATTT CTGGGCGGGT TTTCGTCGGC CACCTCGATG
GTGATTGTCG CCGCCATGAG CCTGTCGACG ATGGTTTCAA ACCACATTGT GATGCCGATC
TGGTTGCGCT CGACCGGGGC CTTCAAAGGG GCGTCGGTTT CTGGGGATGT GCGCTCGGTC
GTGCTTTTTG CGCGGCGTTT TTCCATCGCC GCGATCATGG CGCTCGGCTA TGCCTACTAT
CAGATCTCGG GCGGCGGCGC AGCGCTGGCC GCCATCGGTC TGATCGCTTT TTCGGGCATC
GCGCAGATCC TGCCCGCGCT GGTCGGAGGG CTGTTTTGGC GCGGTGCCAC ACGCGCAGGC
GCGCTTGCGG GGCTGACCAT CGGCTTTGTG GTCTGGAGCT ATACGCTCTT GCTGCCAGAG
GTCGCCGGAG GCGTCTTTTC CAATGCCACG CTGTCGGAAG GGCCGTTTGG AGTCGGATGG
TTACGCCCGC AGGCGCTCTT TGGGATCGAG GGCTTTGACC CCATCGTCCA TTCTGTCCTC
TGGTCCATGA GCCTCAATGT GGCAGCCTTT GCGCTGGTCT CGGTCCTGAG CTTTCCAAGC
CCCATGGAGC GTCTCCAGGG CGCGCAGTTC GTGCATGTCT TTGACCACTC GGCGGGTCCC
GGTGGCTGGA CTGGCTCGGT GGCCCAAAGC GAAGACCTGA TGATTATGTC CCAACGCATC
CTCGGCCCCG AAGAGGCACA GAAGTTCTTT CAGGCGGCGC TGGAACGTCA AGGCGGCCCG
GGGCCATTGC CGGAGCCGAC ACCGAGTTTT CTCGAGCAAC TGGAGCGCGA ACTCAGCGCC
TCGATTGGGG CGGCGGCTGC CCATGCGATG ATCGGCCAGA TTGTCAGCGG TGCAGCGGTG
TCCGTCGAGG ATCTCCTGGC GGTGGCGGAC GAATCGGCAC AACTTCTGGA ATACTCGAGC
CGCCTTGAGG CGCAATCAAA AGAGCTCTCG CGCACCGCGC TGCAGTTGCG GGAGACCAAC
CAGAAGCTAA CCCGTCTCTC TGAGCAGAAA GATGCGTTTC TCTCTCAGGT CAGCCACGAG
CTGCGCACGC CGATGACATC GGTACGTGCC TTTTCCGAAA TCCTGCGCGA TGAGCCTTCT
CTCAATCCCG CTGAGCAGCA TAAATACGCA TCGATCATCC ATGACGAGGC CCTGCGCCTC
ACAAGGTTGC TCAATGACCT GCTGGATCTG AGCGTTCTGG AGAGCGGGTC CGTTTCGCTC
AATGTTTCGC GCCGGCCTCT GGGCGATGTG CTGGATCATG CGTTGTCCTC GGCGCTGGCG
GGCGCGGAGG GTCCGCTGCG GGTGGTGCGG GATCGCAATT CCGAGGCTGT GGAGATTGAA
ACCGACGTCG ACCGGCTGGC GCAGGTCTTC ATCAATCTGA TCGCCAATGC GCAGAAATAC
TGCACTGCAG CTGCGCCGGA GTTGCGCATC AATGTGCGGG TCTTTGCCAA CCGGGTAGAT
GTTGAATTCA TCGACAATGG CGCTGGAATC CCTGCGGATT TTCGCGAAAT GATCTTTGAG
AAATTCTCAC GCGTGACACC CGAACGCGCA GGAGGGGCAG GTCTTGGGCT GGCGATCTGC
AAGGAGATCA TGCGCAAGCT GGGTGGTGAT ATTCATCTGC TTGCGACGCA AAAAGGGGCC
GCTTTTCTGG TCTCTTTGCC ACGAGAGACG AAAATAGAAG AAATCCTCTG A
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| Protein sequence | MTSLNLLAVV SIGYVALLFM VAFWADRQAL RGRSARFMRS PLIYTLSLSI YCTAWTFYGA
VGYAARSGME YVTIYLGPTL VMIGWWWGLR KLVRVGRSQR ISSIADLLSA RYGKSNVLAI
GVTVLAVVGV TPYIALQLQS ITLSVAIFAE ADPSRGHNES GTVFWIAMGL ACFAILFGTR
NLNANERHHG VVMAVALEAV VKLIALVAVG VFVVWGIAGG IEETLARIDR SPIGHWQVDG
GRWTAITFLA AAAFVCLPRM FQVMVVENED ERHLRVAAWA FPTYLLLISI FVVPIAAIGL
ELLPQGSNPD LFVLALPLSQ GQNGLAMLSF LGGFSSATSM VIVAAMSLST MVSNHIVMPI
WLRSTGAFKG ASVSGDVRSV VLFARRFSIA AIMALGYAYY QISGGGAALA AIGLIAFSGI
AQILPALVGG LFWRGATRAG ALAGLTIGFV VWSYTLLLPE VAGGVFSNAT LSEGPFGVGW
LRPQALFGIE GFDPIVHSVL WSMSLNVAAF ALVSVLSFPS PMERLQGAQF VHVFDHSAGP
GGWTGSVAQS EDLMIMSQRI LGPEEAQKFF QAALERQGGP GPLPEPTPSF LEQLERELSA
SIGAAAAHAM IGQIVSGAAV SVEDLLAVAD ESAQLLEYSS RLEAQSKELS RTALQLRETN
QKLTRLSEQK DAFLSQVSHE LRTPMTSVRA FSEILRDEPS LNPAEQHKYA SIIHDEALRL
TRLLNDLLDL SVLESGSVSL NVSRRPLGDV LDHALSSALA GAEGPLRVVR DRNSEAVEIE
TDVDRLAQVF INLIANAQKY CTAAAPELRI NVRVFANRVD VEFIDNGAGI PADFREMIFE
KFSRVTPERA GGAGLGLAIC KEIMRKLGGD IHLLATQKGA AFLVSLPRET KIEEIL
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