| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1498 |
|---|
| Symbol | |
|---|
| ID | 4077054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1603637 |
|---|
| End bp | 1604887 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638006811 |
|---|
| Product | allantoate amidohydrolase |
|---|
| Protein accession | YP_613493 |
|---|
| Protein GI | 99081339 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGC TTGGACAGAA TCTGAAAATC AATGGCGATC GGCTGTGGGA CAGTCTGATG
GATATGGCCA AGATTGGCCC CGGTGTGGCC GGTGGCAACA ATCGCCAGAC GCTCACCGAT
GAGGACGCCG AAGGCCGCGC CCTGTTTCAG TCGTGGTGTG AAGCGGCGGG CATGACCATG
GGGCTCGACT CCATGGGCAA TATGTTTGCA ACCCGCCCGG GTGAAGATCC CGAGGCATTG
CCGGTCTACA TGGGATCGCA TCTCGACACC CAGCCGACGG GCGGCAAATA CGATGGCGTT
CTAGGGGTGC TTGGCGGTCT TGAGGTCGTG CGGACCATGA ATGACCTCGG CATCAAGACC
AAGCACCCGA TCGTGGTGAC CAACTGGACC AATGAGGAAG GCACGCGGTT TGCTCCGGCT
ATGCTGGCGT CGGGCGTGTT TGCCGGCAAA CATACGCAAG ACTGGGCCTA TGGGCGCGAG
GATGCTGAAG GCAAGACCTT TGGCGACGAG CTGAAGCGCA TCGGCTGGGT TGGCGATGAA
GAGGTCGGCG CCCGCAAGAT GCACGCCATG TTTGAGCTGC ACATCGAGCA GGGTCCGATT
CTTGAGGCTG AGAAGAAAGA CATTGGCGTG GTGACACACG GTCAGGGGCT CTGGTGGTTG
CAATGTACCG TGACCGGCAA GGATGCGCAC ACTGGCTCGA CCCCGATGAA TATGCGGGTG
AACGCCGGGC TCGGCATGGC GCGGATGACG GAAGCGGCGC ATCAGATCGC CATGGCGCAT
CAGCCGCATG CAGTGGGCGC AGTGGGGCAT TGCGATGTCT TCCCCAACTC GCGCAATGTG
ATCCCGGGCA AGGTGGTGTT CACCGTGGAT TTCCGCTCTC CCGACCTTGA AAAGCTGACA
TCGATGCGCA CGCAATACGA AGCCAAAGCA AAGGAAATCG CGGCGGAGCT CGGTCTCGGT
CTGGAGATCG AGCCGGTGGG GCATTTCGAC CCGGTGACCT TTGATGAGAG CTGCGTGAGT
GCGGTTCGGG GCGCGGCAGA GCGTTTGGGC TATAGCCACA TGGATATCGT CTCTGGCGCG
GGGCATGATG CCTGCTGGAT CAATGATGTG GCACCCACCG CGATGATCAT GTGTCCTTGC
GTGGACGGTC TGAGCCATAA TGAGGCGGAA GAGATTTCGA AGGACTGGGC CGCGGCCGGC
ACGGATGTGA TGCTGCATGC GGTGCTTGAG ACGGCTGAGA TCGTCGCCTG A
|
|---|
| Protein sequence | MTALGQNLKI NGDRLWDSLM DMAKIGPGVA GGNNRQTLTD EDAEGRALFQ SWCEAAGMTM
GLDSMGNMFA TRPGEDPEAL PVYMGSHLDT QPTGGKYDGV LGVLGGLEVV RTMNDLGIKT
KHPIVVTNWT NEEGTRFAPA MLASGVFAGK HTQDWAYGRE DAEGKTFGDE LKRIGWVGDE
EVGARKMHAM FELHIEQGPI LEAEKKDIGV VTHGQGLWWL QCTVTGKDAH TGSTPMNMRV
NAGLGMARMT EAAHQIAMAH QPHAVGAVGH CDVFPNSRNV IPGKVVFTVD FRSPDLEKLT
SMRTQYEAKA KEIAAELGLG LEIEPVGHFD PVTFDESCVS AVRGAAERLG YSHMDIVSGA
GHDACWINDV APTAMIMCPC VDGLSHNEAE EISKDWAAAG TDVMLHAVLE TAEIVA
|
|---|
| |