Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1479 |
Symbol | |
ID | 4077776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1579845 |
End bp | 1581173 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638006791 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_613474 |
Protein GI | 99081320 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.339918 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTCT CTGATCTCAA ACACTATGTA CCGCGCCTTC CCAGCGGGAT CTACGGCCGG GCGGCGCTTA TTCTGTTGAT GCCGGTGGTG GCTTTACAAC TGGTGGTGGC CTTTGTGTTC ATTCGCCGAG ACCTTGAGGA CATCACGCAG CAAATGGCCT ACACTGTTGC GCGCGAGCTC AATGTCATCA GCGATCAGAT CGCCACCGCA GAAAGTCCCG AAGCGGCCCT GAGTGACCTT CAGCCGATGT TGCAGCGGCT CAATTTTCAG ATGCGTTTTA TCTCTGCCGA GGAGCCCACG CCGCAGAACT CCATTCCGTT TGAGGATCTG TCTGGCCGTT TTGTGCGCGA CTCCATGGTG GGATACCTGC CGCAGTTCCA GTCCATCCGG TTCACGCGCT CCCACGCCAG CTATATCATG ATCGATACAA AATTTGGTCT CGCGGAGGTG AAGTTCAGCC GCCGTCGCGT GACCGTCGCC GCACCACACC AGTTGATCGT GATCACGGTG CTGTTTGGCT TTATGCTTGT GGTGATCGCC ATGGCCTATA TGCGCAACCA ACTGCGCCCC ATCAAACGGC TCGCGGATGC GGCCGAGGCC TTTGGGCGCG GGCGGGTGAT CCCCTATCAC CCGCGTGGGG CAACCGAGGT ACGCGCGGCG GGGGCGGCTT TCAATGACAT GCGCGCGCGC ATTGATCGGC AGATCGAACA GCGCACCTTG ATGTTGTCAG GGGTCAGCCA CGACCTGCGC ACGCCTTTGA CGCGCTTGAA ACTGAGCCTC TCGATGCTGG ACGACGAGGA GGCCGAGCCG ATGTTGCAGG ACGTGAAGGA GATGGAAGCT ATGGTCGATG CCTTTCTCGA CTTCTCGCGC GGTGTGACTA CAAGCGCGAT GGAGGAAACC GACCCCTGCA AGCTCGTGGA GGAAGCGGTC GAGAACTGGA CCCGACAGGG CAAGACCGTG CATCTGGTAG AGACGGTCGG CAATCGCCGG GTGCCGCTGC GGGCCGCTGC GGTGCGTCGT GCCCTTGACA ATCTGATTTC AAACGCGGTG CGCTATGGCA CGCGCGCCCG AGTGTCGGTT GCAGTGATGC AGAAATCGCT GCGCATTCGG GTGGAGGATG ACGGCCCTGG TATCCCCGAA GCATTGCGCG GGGATGCGAT GCGCCCCTTC ACGCGGCTTG ATCCGGCGCG GAATCAGGAT CTGGGCACCG GTGTCGGGCT GGGGTTGGCC ATTGTGGCTG ATATTGCCCG CGCCCATGGT GGAACACTGC GCCTTGGCAC CAGCGAAGAG CTGGGCGGGC TTCAGGCCGA TATTGTGATC GCGCTCTGA
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Protein sequence | MKLSDLKHYV PRLPSGIYGR AALILLMPVV ALQLVVAFVF IRRDLEDITQ QMAYTVAREL NVISDQIATA ESPEAALSDL QPMLQRLNFQ MRFISAEEPT PQNSIPFEDL SGRFVRDSMV GYLPQFQSIR FTRSHASYIM IDTKFGLAEV KFSRRRVTVA APHQLIVITV LFGFMLVVIA MAYMRNQLRP IKRLADAAEA FGRGRVIPYH PRGATEVRAA GAAFNDMRAR IDRQIEQRTL MLSGVSHDLR TPLTRLKLSL SMLDDEEAEP MLQDVKEMEA MVDAFLDFSR GVTTSAMEET DPCKLVEEAV ENWTRQGKTV HLVETVGNRR VPLRAAAVRR ALDNLISNAV RYGTRARVSV AVMQKSLRIR VEDDGPGIPE ALRGDAMRPF TRLDPARNQD LGTGVGLGLA IVADIARAHG GTLRLGTSEE LGGLQADIVI AL
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