| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1465 |
|---|
| Symbol | |
|---|
| ID | 4077762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1565595 |
|---|
| End bp | 1566356 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006776 |
|---|
| Product | phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| Protein accession | YP_613460 |
|---|
| Protein GI | 161899029 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0152] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase |
|---|
| TIGRFAM ID | [TIGR00081] phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.578774 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGGC GCAAGAAGAT TTACGAAGGC AAGGCAAAAA CTCTGTATGA AGGGCCCGAA
CCGGGCACGA TCGTCCAGTA CTTCAAGGAC GATGCCACAG CCTTCAATGC CGAAAAGCAC
GACGTGATCG AGGGCAAGGG TGTCCTGAAC AACATCCTGA GCGAATTCTT CATGCTGGGT
CTGGGGCAGA TCGGGGTGCC AACACACTTC CTGAAACGGC TGAACATGCG CGAACAACTC
GTGCGCTCTT GCGAGATCGT CCCGCTGGAG ATCATCGTTC GCAACTATGC CGCCGGGTCG
CTGTGCAAGC GTCTCGGGAT GGACGAAGGC ACTCAGTTGC CGCGTCCGAT CGTGGAATAT
TGCTACAAGG ACGACGCGCT GGGGGACCCG CTGGTCACCG AAGAGCATAT CGCCGCCTTT
GGCTGGGCGA GCCAGCAGGA CATGGATGAT ATCTTGTCGC TGGCGCTGCG GGTGAATGAC
TTCCTCTCTG GCGTGATGCT CGCCGTGGGG ATCCGCCTCG TGGACTTCAA GATCGAGATC
GGCCGGATCT ACGACGGCGA TTTCCAGCGT CTTGTGGTGG CCGATGAGAT CAGCCCCGAC
AGCTGCCGTC TGTGGGACAT CAAGACCGGG CAAAAGCTCG ACAAGGATGT GTTCCGCCGC
GACCTTGGCA GCCTCACGGA TGCCTATACC GAGGTGGCCC GCCGTCTGGG CGTCATGCCC
AACAACCCAC CCGCGCCGGG CAAGCCCCAG CTGGTGAACT AA
|
|---|
| Protein sequence | MARRKKIYEG KAKTLYEGPE PGTIVQYFKD DATAFNAEKH DVIEGKGVLN NILSEFFMLG
LGQIGVPTHF LKRLNMREQL VRSCEIVPLE IIVRNYAAGS LCKRLGMDEG TQLPRPIVEY
CYKDDALGDP LVTEEHIAAF GWASQQDMDD ILSLALRVND FLSGVMLAVG IRLVDFKIEI
GRIYDGDFQR LVVADEISPD SCRLWDIKTG QKLDKDVFRR DLGSLTDAYT EVARRLGVMP
NNPPAPGKPQ LVN
|
|---|
| |