| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1459 |
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| Symbol | |
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| ID | 4077756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1557176 |
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| End bp | 1560106 |
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| Gene Length | 2931 bp |
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| Protein Length | 976 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006770 |
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| Product | RNAse E |
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| Protein accession | YP_613454 |
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| Protein GI | 99081300 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000280055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.379566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGA AAATGCTGAT CGACGCCACC CACGCAGAGG AAACTCGCGT TGTGGTGGTG
GATGGAAACA AAGTTGAGGA ATTCGACTTT GAATCTGAAA ACAAACGCCA GCTGGCTGGC
AATATCTATC TTGCAAAAGT AACCCGCGTC GAGCCTTCGC TGCAGGCCGC TTTTGTGGAC
TATGGCGGCA ACCGCCATGG CTTCCTCGCG TTTTCGGAAA TTCACCCGGA CTATTACCAG
ATCCCCGTCG CGGACCGCGA GGCCCTGATG GAAGAAGAGC GCGCCTATGC CGAGGCAATG
CGCGCCCGCG ATGAAGAAGA CGACGAACCC AAGCCCAAGC GCCGCAGCCG CTCGCGCAGC
AAGACCCGCG CTGAAAAAGC CAAGACCGCT GACGCCGTTG AAACAAAAGA AGTCGCCACC
CCCGAGGGTG AGATTTCCGG AATGGAGACA ATTGACCTCA GCGATGACAG CACGGTGCTG
GCAGAGGTGC CGGAGGCGAC CTCGCCGATG GAAACCGTAG CAGAGACCCC GGTCGAGGAA
CCGGTGGGCG ATGATGCAGC GGCAGAGATG CCTGAGGCGG ACACAACTGA CGGCGAAGCG
CCAGCGGGCG ACGACAGCGT CGTAGCAGAA CCCGCGACAG ATGGCGAAGC CGAAACCGTG
GCCGAAGACT CCGCCGCTAT TGAAGAGGCG GATGCGGACG ACGACACCGA TGAAGGTGGC
ACAGAGGATG CGCCCGAGGC GAAAACCGGT GGGGCTGATG CAGCCGACAA GGATGACAGC
ATCGAGTCGG TTGCCGACGA CGATGATCAG GAAGACATTC GTCCGCCGCG CAAACCGCGC
CCCAAACGGT ACAAGATCCA AGAGGTCATC AAGGTCCGTC AGGTGCTGTT GGTGCAGGTT
GTCAAGGAAG AGCGTGGCAA CAAGGGCGCT GCGCTGACCA CTTACCTGTC TCTTGCAGGT
CGCTATTGCG TTCTGATGCC CAACACCGCC CGTGGCGGCG GCATCTCGCG CAAGATCACC
AATGCCGCAG ACCGCAAGAA ACTCAAGGAC ATCGCGACCG AACTTGATGT GCCGACCGGG
GCGGGACTCA TCGTGCGCAC CGCCGGGGCC AAACGCACCA AGGCGGAGAT CAAGCGCGAC
TATGAATACC TTCAGCGCAT GTGGGAGCAG ATCCGCGAAC TGACGCTGAA ATCCATCGCG
CCCGCAAAGA TCTATGAAGA GGGCGACCTC ATCAAACGCT CGATCCGCGA CCTGTATAAT
CGCGAGATCG ACGAGGTTCT GGTTGAAGGC GAACGCGGCT ACCGCATCGC CAAGGACTTC
ATGAAGATGA TCATGCCGTC CCACGCCAAG AACGTGAAAA ACTACCAGGA TCAGCTGCCG
CTCTTTGCGC GTTATCAGGT GGAAAGCTAT CTCGGCGGGA TGTTCAATCC GACCGTTCAG
CTGAAGTCGG GCGGCTATAT CGTGATCGGC GTGACCGAGG CACTGGTGGC AATCGACGTG
AACTCCGGCC GGGCAACTAA GGAAGCATCG ATCGAGGAAA CCGCGGTCAA GACCAACCTG
GAGGCGGCCG AAGAAGTGGC GCGCCAGCTG CGTCTGCGCG ATCTCGCGGG TCTCATTGTG
ATCGACTTCA TCGACATGGA CGAGCGCAAG AACAATGCCG CCGTCGAGAA GAAGCTCAAA
GACAAGCTCA AGACCGATCG TGCCCGTATT CAGGTGGGCC GGATCTCCGG CTTTGGCCTC
TTGGAAATGT CGCGCCAGCG TCTGCGTCCG GGCATGATCG AGGCAACAAC AGCGCCTTGT
CCGCATTGTC ACGGCACCGG ACTTATCCGG TCGGACGACA GCATGGCGCT GTCCATCCTG
CGTCAGATCG AAGAGGAAGG CACCCGCCGC CGGTCGCGCG AAGTGCTGGT AAAATGTCCC
GTGGACATCG CGAACTACCT GATGAACCAG AAGCGCGAGC ATATCGCTCA GATCGAAGCG
CGCTATGGCC TGTCGGTCCG GATCGAAGGC GATGTGACCC TCGTCAGCCC GGATTTCTCG
CTTGAGAAGT TCAAGACGGC ATCGCGCGCG ATCCCTGCAG TCACGACCCC TGTGGTGTCG
GTGGATGCAT CGATCATGGA TCAGGTCGAT GCCATTGAAG AGGTTGCTGA AACCCCGGAG
GAAGCGCCTG CGCCCCAAGC CCCTGAAGCC GATGAAACCG AAGGCGAGGC AAAGCCCAAG
CGCAAGCGTC GTCGCCGGCG TCGCAAGAAG TCTGGCAATG GCGAGAACGG TCAGGACGCT
GACGCGCAGG CAAGTGAGGC AAATGCCTCC GATGCCTCCG ATGCGGCGAC AGACTCTCAG
GATGCTGAGT CAGATTCCAA AACCGAAACC GCGCCGGATG CCGCTGGCGA AGGCGACGGA
GAGGCGGAGC CCAAGAAGAA GCGCACTCGG ACGCGCACCC GCAGCCGCTC TCGCAAGAAG
GTGGAAACCG AGGTAGCTGC AGAGGCAGAG GCTCAGGACG CCGCTCCGGA AGCGACGCCT
TCGGAAGCCT CTGAGGCAGA AGAGGCAGCC CCAGCCGAAC CGGCAGCACC TGCTCCGGTT
GAGGATGCGG CTGTTGATGA GGCGCCTGTT GTCGCTGCAG AGACCACTGC ATCCGAAGAG
GCAACTGCGG AGGAAGCACC CTCCGAGGCA CCGCAGAACA CTGCAGACTC GCAAGAGGCG
CCGAAGGCCG AGACTGTTGT TGCCGAGACG ACACCTGCTC CGGTCGCAGC AGAAGAGGCC
GCATCTGAAG AAGTTGCTCC TGAAGAGACC CCGGAGCCGG TTCAGGAGGA GACCCACGCA
GAGGTTGAAC CCGAAGAGGC GAAGCCGGAA CCGGCGCTTG CGGTTGCGGA ACCTGAACCC
GAGGAACCGG CCAAGCCCAA ACGGCGCGGC TGGTGGTCCG TGGGTCGTTA A
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| Protein sequence | MAKKMLIDAT HAEETRVVVV DGNKVEEFDF ESENKRQLAG NIYLAKVTRV EPSLQAAFVD
YGGNRHGFLA FSEIHPDYYQ IPVADREALM EEERAYAEAM RARDEEDDEP KPKRRSRSRS
KTRAEKAKTA DAVETKEVAT PEGEISGMET IDLSDDSTVL AEVPEATSPM ETVAETPVEE
PVGDDAAAEM PEADTTDGEA PAGDDSVVAE PATDGEAETV AEDSAAIEEA DADDDTDEGG
TEDAPEAKTG GADAADKDDS IESVADDDDQ EDIRPPRKPR PKRYKIQEVI KVRQVLLVQV
VKEERGNKGA ALTTYLSLAG RYCVLMPNTA RGGGISRKIT NAADRKKLKD IATELDVPTG
AGLIVRTAGA KRTKAEIKRD YEYLQRMWEQ IRELTLKSIA PAKIYEEGDL IKRSIRDLYN
REIDEVLVEG ERGYRIAKDF MKMIMPSHAK NVKNYQDQLP LFARYQVESY LGGMFNPTVQ
LKSGGYIVIG VTEALVAIDV NSGRATKEAS IEETAVKTNL EAAEEVARQL RLRDLAGLIV
IDFIDMDERK NNAAVEKKLK DKLKTDRARI QVGRISGFGL LEMSRQRLRP GMIEATTAPC
PHCHGTGLIR SDDSMALSIL RQIEEEGTRR RSREVLVKCP VDIANYLMNQ KREHIAQIEA
RYGLSVRIEG DVTLVSPDFS LEKFKTASRA IPAVTTPVVS VDASIMDQVD AIEEVAETPE
EAPAPQAPEA DETEGEAKPK RKRRRRRRKK SGNGENGQDA DAQASEANAS DASDAATDSQ
DAESDSKTET APDAAGEGDG EAEPKKKRTR TRTRSRSRKK VETEVAAEAE AQDAAPEATP
SEASEAEEAA PAEPAAPAPV EDAAVDEAPV VAAETTASEE ATAEEAPSEA PQNTADSQEA
PKAETVVAET TPAPVAAEEA ASEEVAPEET PEPVQEETHA EVEPEEAKPE PALAVAEPEP
EEPAKPKRRG WWSVGR
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