| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1431 |
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| Symbol | |
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| ID | 4078061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1528549 |
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| End bp | 1529139 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638006741 |
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| Product | shikimate kinase |
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| Protein accession | YP_613426 |
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| Protein GI | 99081272 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0703] Shikimate kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.373345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0895571 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA ATCACCAAAT CAGCGATGCG ACGGCAGAAA CTCGCGCGCC GGGACGATTA
AAAAAGACCA TTGTGCTGGT GGGTATGATG GGAGCGGGAA AGACCGCAGT CGGGCGCGCC
TTAGCTGCCC GCCTCGACGT CCCTTTTCTC GACAGCGATC ATGAGATCGA GTCTGCCGCG
AATATGTCGA TCCCCGAGAT CTTTGCCCGC GATGGCGAGC CGTTCTTTCG TGAAAAAGAA
CATCAGGTGA TCGCGCGCCT CCTAAAAGAG GAATGCGGTG TCCTGTCGAC CGGCGGTGGC
GCTTTTCTCG CGGAGCGCAA TCGCACCATG ATTTCCGAGA TCGGCGTCTC GGTCTGCCTG
CAAGCCGATC TTGATGTGTT GTGGAAACGC GTAAAAGGAC GCGACACGCG TCCCCTTTTG
CGCTCCGCCG ACCCTTACCA GACGCTCTCG GACCTGTATC ACGCGCGGGT GCCAACTTAC
GCGATGGCGG ATCTCAAGGT GATCTCTGAC GGGCAGGTTT CGATCGACAA TATGGTGGAC
CGGGTGCTGG AGGCCTTGCG CACCCGACCG GATGTACTGG AGTTTGACTG A
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| Protein sequence | MSENHQISDA TAETRAPGRL KKTIVLVGMM GAGKTAVGRA LAARLDVPFL DSDHEIESAA
NMSIPEIFAR DGEPFFREKE HQVIARLLKE ECGVLSTGGG AFLAERNRTM ISEIGVSVCL
QADLDVLWKR VKGRDTRPLL RSADPYQTLS DLYHARVPTY AMADLKVISD GQVSIDNMVD
RVLEALRTRP DVLEFD
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