| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1418 |
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| Symbol | |
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| ID | 4078048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1512170 |
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| End bp | 1513222 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638006728 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_613413 |
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| Protein GI | 99081259 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.137235 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACCAT TCATATTGCG CCGCACGGGT GTGATGATCA TTACGGCTTT GTGCCTGACG
TTCATCGTCT TCGTGATGAC CAATCTCTAT CCAAACCTCG AAAAACTCGC CAAGACCGAA
GGCAACTTCC GCATGTCGGA CGAAGCGGTT GCAAGCTGGC TTGATAAGAA TGGCTACGGT
CAGCCGATGC TGTTGAAATA CGGCCAGTGG CTGGGCGTGG TTCCCGGTTG GCAGCGCAGC
GGCGAGGAAG GCGTCACCGG GCGTTGCATT GATGGAACCG TCACCCCGGA AGAAGCCGCG
CAGGCCGCGC GGTTTTGTGG CATTCTGCAA GGCGACTGGG GCTATTCCAC ACGTTTCAAA
ACAGACGTGA GCGAAATCAT CCAGACCCGG CTGGGCAACA CCGGCTATCT GATGATGTGG
GTTTTGATCC TCATGGTGCC CTCGGCCCTG ATCGTGGGCG TTCTGGCCGG GATGCGCGAA
GGTTCGGCAA CCGACAGGTC CCTGTCGACC GTGTCGATCA TGACGACCGC GACGCCGGAA
TATGTGTCGG GCGTGATCTT CATTGCGGTC TTTGCCTCCT CCACAGTGGG GCTCAAATGG
TTCAAAGGCA CCGCAACCGC TGCCATGGAG AACCCGACGT TTGAGAATTT CTTCCTGCCG
GTACTGACCA TCGCGCTCTA TGGCATGGGC TATATCGCCC GGATGACACG CGCCTCCATG
ACCGAAGTGA TGACGGCCCA ATACATCCGG ACTGCACGCC TTAAGGGGGT GAGTTTTCCA
AACATCGTTC TGCGCCACGC GCTGCGCAAT GCGTTGATTG CCCCCTTCAC GGTAATCATG
CTGCAGTTCC CCTGGTTGTT GAACGGAGTC GTGATTGTCG AAACCTTGTT TAACTACAAG
GGCTTCGGCT GGGCACTGGT CGAGGCGGCC AGCAACAACG ACATCGAGCT TCTGCTGGCG
ATTTCGGTCG TCTCCGTCAT CGTGGTTCTG TTGACGCAGC TGATTTCCGA CATCGGCTAC
ATCTTCTTGA ACCCCCGTAT CCGTATCTCG TAA
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| Protein sequence | MGPFILRRTG VMIITALCLT FIVFVMTNLY PNLEKLAKTE GNFRMSDEAV ASWLDKNGYG
QPMLLKYGQW LGVVPGWQRS GEEGVTGRCI DGTVTPEEAA QAARFCGILQ GDWGYSTRFK
TDVSEIIQTR LGNTGYLMMW VLILMVPSAL IVGVLAGMRE GSATDRSLST VSIMTTATPE
YVSGVIFIAV FASSTVGLKW FKGTATAAME NPTFENFFLP VLTIALYGMG YIARMTRASM
TEVMTAQYIR TARLKGVSFP NIVLRHALRN ALIAPFTVIM LQFPWLLNGV VIVETLFNYK
GFGWALVEAA SNNDIELLLA ISVVSVIVVL LTQLISDIGY IFLNPRIRIS
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