| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1410 |
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| Symbol | |
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| ID | 4078040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1503751 |
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| End bp | 1504938 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006720 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_613405 |
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| Protein GI | 99081251 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0848317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGGGG TCACTATGAA AAAGATATCG ATTTTTGGGG CAACGGGATC AATCGGGCAG
AGCACCATTG ACCTGATCCG CCGCGCCCCC GACGCCTATG ACGTGGTGGC GCTCAGCGGT
GGGCATAATG TGGCGCAGCT GGCGCGGGAC GCCATAGAAC TGCAAGCAGA TATAGCGATC
ACGGCGCATG ACGCCCGGCT TGAGGAGCTG CGCTCCGCGC TTGCGGGCAG TGGCGTTGAA
GCGGCCTCGG GCGCGGCGGC CCTGGTGGAG GCCGCAAGCC GTCCTGCGGA TTGGATCATG
TCGGCCATCG TGGGCGCTGC GGGTCTTGCG CCGGGCCTCA AAGCGCTGGA GCAGGGCACG
ACGCTGGCGC TGGCCAACAA GGAATCCCTC GTCTGTGCGG GCGCGCTTTT GATGCAGACC
GCTGCAGATC ACGGCGCGCG GATTTTGCCC GTGGACAGTG AGCACTCAGC TGTGTTTCAG
GCGCTTGTCG GCGAACGTAT CGAAGAGGTC GAGCGTATCA TCATCACTGC GTCGGGCGGT
GCCTTTCGGG ACTGGCCGCT GGAACGGTTA AAAACGGCAT CATTGGCCGA GGCCTCTTCT
CATCCCAATT GGGACATGGG GCAGCGGATC ACGATCGACA GTGCGTCGAT GTTCAACAAG
GCGCTTGAAG TCATTGAAAC CAGAGAATTC TTTGGTGTTG CGCCTGAGCA GATCGAGGTA
TTGGTGCATC CCCAGTCGCT GGTTCATGCG CTGGTCGGAT TTCGCGATGG TGCGCTCATG
AGCCACCTTG GCGCGCCGGA TATGCGCCAT GCCATCGGCT ATGCGTTGCA CTGGCCGGAC
CGCAATGCGC TGCCGGTGGC GCGGCTCGAT CTGGCCGCAA TCGGCCAGCT GGAATTTCGC
GCGCCCGATC TTCAGCGCTA TCCGGCGCTG AGGCTTGCGC AAGAGGTCAT GCGGCGTGGC
GGGCTGAGCG GGGCGGCCTT CAACGGCGCC AAGGAACGCG CGCTCGATCA CTTTATCGCG
GGGCGCATTG GTTTTCTGGA CATGGCCAGC CTAACTGAAG AAGGACTGGC GACGCTCGAG
GCCCAACCGG GCCTTATTGA TGCCTCAATG ACACTTGAAA ACGTCACCCG AGTTGACGAT
CTGGCGCGTA GGGCGGTGGA TCAGGTCGTG ACGCAACGAA CAGGATAG
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| Protein sequence | MHGVTMKKIS IFGATGSIGQ STIDLIRRAP DAYDVVALSG GHNVAQLARD AIELQADIAI
TAHDARLEEL RSALAGSGVE AASGAAALVE AASRPADWIM SAIVGAAGLA PGLKALEQGT
TLALANKESL VCAGALLMQT AADHGARILP VDSEHSAVFQ ALVGERIEEV ERIIITASGG
AFRDWPLERL KTASLAEASS HPNWDMGQRI TIDSASMFNK ALEVIETREF FGVAPEQIEV
LVHPQSLVHA LVGFRDGALM SHLGAPDMRH AIGYALHWPD RNALPVARLD LAAIGQLEFR
APDLQRYPAL RLAQEVMRRG GLSGAAFNGA KERALDHFIA GRIGFLDMAS LTEEGLATLE
AQPGLIDASM TLENVTRVDD LARRAVDQVV TQRTG
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