Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1409 |
Symbol | |
ID | 4078039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1502394 |
End bp | 1503746 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638006719 |
Product | peptidase RseP |
Protein accession | YP_613404 |
Protein GI | 99081250 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.139701 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGACGCAG TATTTTTGGT CTCGCAACTG GGCGGGCTCC TTTACACGAT CGGCAGCTTT GTCGTGGTGC TTTCGATCAT CGTGTTCGTG CATGAATACG GTCATTACAT CGTGGGACGT TGGTGCGGCA TTCATCCGGA GGTCTTCTCG CTGGGGTTTG GCCCGGTGCT GGCCAGCCGG GTCGACAAGC GCGGCACCCG ATGGCAGCTG GCGGCCTTTC CGTTTGGCGG GTTTGTGAAA TTTCTGGGCG ACGCGGACGC GGCCTCTGGC AAGGATGCCA GCGCGATTTC GGCGGCCGAG CGCGACCCTG AACTGCTGCG CAAAACCATG CATGGCGCGC CGCTCTGGGC GCGGGCGGCA ACCGTGGCGG CGGGTCCGAT TTTCAACTTC GTCCTTGCGG CAGTGATCTT CACCGGCGTC AATCTGAGCC GGGGCCAGAT GCAGGAGCCT TTTGCAGTAG GCGAAATCAA GCCACTGCCC GCAGAGAGCT ACACCCTGCA GCCCGGTGAC GAAATTCTGT CGGTCGCAGG GATCGTGACG CCAGATTTTT CTGACGCCGT TGCTTGGGGC GCCTTCGAGG GCGGCCTGCC AGTGGAAAAG GTTCTGGAGT ATCGCGTTGT GCGCGACGGT CAGGAAATGA TCGCCCGCGG GCCCTATCTG ACCCCAAGCC TCGTCTCCGG TGTGGCGCCG CGCAGCGCGG CATCTGACGC AGGCCTGCGC GAAGGCGATG TGATCGTAGG GGTCGATGGT GAAGAGATCT TTGCCTTCTC CCACTTGAAG GAACGTGTCG AGACCGGTGC GGGTGCGCCC TTGGAGTTGA CCGTCTGGAA CGCGGGCCAG ACACGCGAGG TGACACTAAC GCCACGCCGA ACCGATGAAC CGACAGCCGA TGGCGGGTTC CAGACCAATT GGCGGATCGG GATCGCCGGC GGGCTTGCCT TTGAGCCTGC GCGCGAGTCG GTCTCGCCTG TGGCCGCCGT CGGGCAGGGG GTGACACAGG TCTGGATCAT GATTGAACAA TCCCTTTCGG GTCTGAAACA CATGATCACG GGTCAGATCA GCACCTGCAA CCTCTCTGGC CCGGTTGCGA TCGCCGAGAT TTCCGGAACT CTGGCAAGCC AGGGGGCGAT GAATTTCATC TGGTTGATTG CGGCGCTGTC GACAGGGATT GGTCTTTTGA ACCTTTTTCC AGTGCCGGTG CTGGATGGCG GTCACCTGGT TTTCTTTGCC TATGAGGCCG TGACCGGGAA GCCCCCGAAT GATCGCGCGA TGCAGATCCT GATGACCATC GGCCTGACCC TGATCCTTGG TCTGATGATC TTTTCCGTCA GCAACGATCT TTTGTTCTGC TGA
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Protein sequence | MDAVFLVSQL GGLLYTIGSF VVVLSIIVFV HEYGHYIVGR WCGIHPEVFS LGFGPVLASR VDKRGTRWQL AAFPFGGFVK FLGDADAASG KDASAISAAE RDPELLRKTM HGAPLWARAA TVAAGPIFNF VLAAVIFTGV NLSRGQMQEP FAVGEIKPLP AESYTLQPGD EILSVAGIVT PDFSDAVAWG AFEGGLPVEK VLEYRVVRDG QEMIARGPYL TPSLVSGVAP RSAASDAGLR EGDVIVGVDG EEIFAFSHLK ERVETGAGAP LELTVWNAGQ TREVTLTPRR TDEPTADGGF QTNWRIGIAG GLAFEPARES VSPVAAVGQG VTQVWIMIEQ SLSGLKHMIT GQISTCNLSG PVAIAEISGT LASQGAMNFI WLIAALSTGI GLLNLFPVPV LDGGHLVFFA YEAVTGKPPN DRAMQILMTI GLTLILGLMI FSVSNDLLFC
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