Gene TM1040_1409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1409 
Symbol 
ID4078039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1502394 
End bp1503746 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content61% 
IMG OID638006719 
Productpeptidase RseP 
Protein accessionYP_613404 
Protein GI99081250 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0750] Predicted membrane-associated Zn-dependent proteases 1 
TIGRFAM ID[TIGR00054] RIP metalloprotease RseP 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.139701 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGACGCAG TATTTTTGGT CTCGCAACTG GGCGGGCTCC TTTACACGAT CGGCAGCTTT 
GTCGTGGTGC TTTCGATCAT CGTGTTCGTG CATGAATACG GTCATTACAT CGTGGGACGT
TGGTGCGGCA TTCATCCGGA GGTCTTCTCG CTGGGGTTTG GCCCGGTGCT GGCCAGCCGG
GTCGACAAGC GCGGCACCCG ATGGCAGCTG GCGGCCTTTC CGTTTGGCGG GTTTGTGAAA
TTTCTGGGCG ACGCGGACGC GGCCTCTGGC AAGGATGCCA GCGCGATTTC GGCGGCCGAG
CGCGACCCTG AACTGCTGCG CAAAACCATG CATGGCGCGC CGCTCTGGGC GCGGGCGGCA
ACCGTGGCGG CGGGTCCGAT TTTCAACTTC GTCCTTGCGG CAGTGATCTT CACCGGCGTC
AATCTGAGCC GGGGCCAGAT GCAGGAGCCT TTTGCAGTAG GCGAAATCAA GCCACTGCCC
GCAGAGAGCT ACACCCTGCA GCCCGGTGAC GAAATTCTGT CGGTCGCAGG GATCGTGACG
CCAGATTTTT CTGACGCCGT TGCTTGGGGC GCCTTCGAGG GCGGCCTGCC AGTGGAAAAG
GTTCTGGAGT ATCGCGTTGT GCGCGACGGT CAGGAAATGA TCGCCCGCGG GCCCTATCTG
ACCCCAAGCC TCGTCTCCGG TGTGGCGCCG CGCAGCGCGG CATCTGACGC AGGCCTGCGC
GAAGGCGATG TGATCGTAGG GGTCGATGGT GAAGAGATCT TTGCCTTCTC CCACTTGAAG
GAACGTGTCG AGACCGGTGC GGGTGCGCCC TTGGAGTTGA CCGTCTGGAA CGCGGGCCAG
ACACGCGAGG TGACACTAAC GCCACGCCGA ACCGATGAAC CGACAGCCGA TGGCGGGTTC
CAGACCAATT GGCGGATCGG GATCGCCGGC GGGCTTGCCT TTGAGCCTGC GCGCGAGTCG
GTCTCGCCTG TGGCCGCCGT CGGGCAGGGG GTGACACAGG TCTGGATCAT GATTGAACAA
TCCCTTTCGG GTCTGAAACA CATGATCACG GGTCAGATCA GCACCTGCAA CCTCTCTGGC
CCGGTTGCGA TCGCCGAGAT TTCCGGAACT CTGGCAAGCC AGGGGGCGAT GAATTTCATC
TGGTTGATTG CGGCGCTGTC GACAGGGATT GGTCTTTTGA ACCTTTTTCC AGTGCCGGTG
CTGGATGGCG GTCACCTGGT TTTCTTTGCC TATGAGGCCG TGACCGGGAA GCCCCCGAAT
GATCGCGCGA TGCAGATCCT GATGACCATC GGCCTGACCC TGATCCTTGG TCTGATGATC
TTTTCCGTCA GCAACGATCT TTTGTTCTGC TGA
 
Protein sequence
MDAVFLVSQL GGLLYTIGSF VVVLSIIVFV HEYGHYIVGR WCGIHPEVFS LGFGPVLASR 
VDKRGTRWQL AAFPFGGFVK FLGDADAASG KDASAISAAE RDPELLRKTM HGAPLWARAA
TVAAGPIFNF VLAAVIFTGV NLSRGQMQEP FAVGEIKPLP AESYTLQPGD EILSVAGIVT
PDFSDAVAWG AFEGGLPVEK VLEYRVVRDG QEMIARGPYL TPSLVSGVAP RSAASDAGLR
EGDVIVGVDG EEIFAFSHLK ERVETGAGAP LELTVWNAGQ TREVTLTPRR TDEPTADGGF
QTNWRIGIAG GLAFEPARES VSPVAAVGQG VTQVWIMIEQ SLSGLKHMIT GQISTCNLSG
PVAIAEISGT LASQGAMNFI WLIAALSTGI GLLNLFPVPV LDGGHLVFFA YEAVTGKPPN
DRAMQILMTI GLTLILGLMI FSVSNDLLFC