| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1407 |
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| Symbol | |
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| ID | 4078037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1499580 |
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| End bp | 1501970 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638006717 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_613402 |
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| Protein GI | 99081248 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.308963 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCTGGG GGAAAAACGC GGCATGTGCC CGCGATGCGC GCCGAGAGGG CGCAATGTCC
GTTTCTTTTA AGGGCTTTCT GGGAACCACC GCGCTTTCTG CGGTGCTGGC GATCGGGCTT
GGGATCGCGC CGCTGCCGGC GCAGTCTCAG GAATTCCGGT TCACCAATGT ACGCGTCGAG
GGAAACCAGC GCATTCAAAG CTCGACCATC GTGGCCTATA CGGGCCTCTC GCGAGGAGAG
CGGGTGAGCG GTGGTGAGCT CAACGATGCC TACCGCGGCG TGTTTGACAG CGGTTTGTTC
GAGTCTGTCG AACTGGTGCC CCGTGGCAAT ACGCTCGTCA TCAAAGTGGT GGAATTTCCC
ACCATCAGCC GGATCAGTTT TGAGGGCAAC AAACGTCTGA AGGACGACGC ACTTGGCGAG
GTGATTGAAT CCTCGCCGCG CCGTGTGTTC AGCGCCGATC AGGCAGAACG CGATGCGGGC
GCAATTGCTG AACTCTATCG CGCGCAGGGC CGTCTGGCCT CTCGGGTGAC GCCGCGCATC
ATCCGCCGCA GCGACAATCG CGTCGATCTC ATCTTTGAGA TCTCCGAAGG CGATACCGTC
GAAGTCGAGC GCGTCTCCTT TGTCGGCAAC CGCGCGTTCT CGGATCGGCG TTTGCGGCGC
ATCCTTGAGA CCAAACAGGC CACATTCCTG CGGGCTCTGA TCAACCGGGA TACGCTGATC
GAGGATCGTA TCCAGTTCGA CCGTCAGGTG TTGACTGATT TCTACCGCTC GCGCGGCTAT
GTCGATTTCC GGGTCAACAG CGTCAATGCC GAAGTTACAA AGGAGCGCGA TGCGGCTTTC
CTCGTGGTGG ATGTGACCGA AGGCCAGCAG TTTGAGTTTG GCGAGATCAC CGTCACCAGC
GAGTTTGCCG ATGCAGATCC GGATCTCTAC CGCAGTAAAT TGCGCCTGAA GCCGGGCGTG
ACCTACTCGC CGCTGTTGAT CGAAAATGCG ATTGAGACTC TCGAGCAACT CGCGGTGCGT
CAGGGGATTG ATTTCCTGCG GGTGGAGCCG CGTGTCACGC GCAATGATCG GGATCTGACA
CTCGATGTTG AATTTGCAAT GGTCCGCGGA CCGCGGGTCT TTGTCGAGCG CATCGACATT
GAAGGCAACA CCACCACTCT CGACCGGGTG ATCCGTCGAC AGTTCCGCAT CGTTGAGGGC
GACCCTCTCA ATCAGCGCGA AATCCGCAAC AGCGCCGAAC GTATCAAGGC TCTGGGCTTC
TTCTCGGAAT CCGAGGTGGA TGTGCGTCAG GGCAGCACGC CAAGCGAGGT CATTGTTGAT
GTCGATGTGG TCGAGCAACC CACCGGTTCG TTCAACCTTG GTGGTTCCTA CTCGGTGGAC
GACGGGATCG GGGTGGCAAT CGGGATTTCC GAAAAAAACT TCCTTGGACG CGGTCAGCAA
CTGTCGTTCA ATATTTCGAC CACAGAAGAC ACCGAAGCCT ACAATCTGCG CTTTGGCGAG
CCCAAGCTTC TCGGCCGTGA TCTGCAGTTC GCCATCGACC TCGGTCTGAG CGAAACAGAG
TCGAGCTACT CCGAGTATGA CACCAAAGAG GTGGTCTTCC GCCCATCCAT CACCTTTGAT
GCCAGCGAAA CCACATCGTT GCAGTTGCGG TATGGGTTTG AGCAGGACGA GATGGAAAGC
CGTGGTCTCG ACAGCAACAA TCAACCTCTG GTTGGTCCGG TGCTTCAGCG CGAGATCGCA
GAAGGCAAGC GCACGACAAG CTCCATCGGG GCGACCTTCA CCTATGACAG CCGTCGCACC
GGTCTCAACC CAACGGCCGG GTTCCTTGTC CAGAGCGGCA TCGATTATGC GGGTCTTGGT
GGGGACAATG AATACATCCG TGCCACCAGC AAGATCGTGG CGCAGAAGCT TGTGTTCAAC
GAAGAGGTCA CTCTGCGCGC CACCGTGGAA GCAGGCTATC TTGGCTGGCT CGGTGACAAT
CGCAGCCGCA CCATCGATCG CTTTCTTCTG ACTTCGGACA CTCTGCGTGG CTTTGAGCCT
GGCGGGATTG GTCCGCGTGA TATGAGCGGC TCTTACGACG ACGCGCTCGG CGGCAACCTT
TATGCGGTCG CGCGTTTTGA TGCGGAGTTC CCTCTGGGCC TGCCGGAAGA GCTCGGCCTG
CGTGGCGGTC TCTTTTATGA CGTCGGCAAC CTCTGGGGGC TGGAAGATTC CAACGCTGAT
TTCGGCAGCA ATGTCGTCGG ACGCGACGGC TCCTTCCGCC ATGTCGTCGG CTTTTCGCTT
CTCTGGACCA CGGGCCTTGG ACCATTGCGG TTCAACTTCT CCAAGGCACT GGTCAAGGAA
GACTTCGACA AGGAGCGGAA CTTCGACCTG ACCATTCAGG CGCGGTTCTA A
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| Protein sequence | MVWGKNAACA RDARREGAMS VSFKGFLGTT ALSAVLAIGL GIAPLPAQSQ EFRFTNVRVE
GNQRIQSSTI VAYTGLSRGE RVSGGELNDA YRGVFDSGLF ESVELVPRGN TLVIKVVEFP
TISRISFEGN KRLKDDALGE VIESSPRRVF SADQAERDAG AIAELYRAQG RLASRVTPRI
IRRSDNRVDL IFEISEGDTV EVERVSFVGN RAFSDRRLRR ILETKQATFL RALINRDTLI
EDRIQFDRQV LTDFYRSRGY VDFRVNSVNA EVTKERDAAF LVVDVTEGQQ FEFGEITVTS
EFADADPDLY RSKLRLKPGV TYSPLLIENA IETLEQLAVR QGIDFLRVEP RVTRNDRDLT
LDVEFAMVRG PRVFVERIDI EGNTTTLDRV IRRQFRIVEG DPLNQREIRN SAERIKALGF
FSESEVDVRQ GSTPSEVIVD VDVVEQPTGS FNLGGSYSVD DGIGVAIGIS EKNFLGRGQQ
LSFNISTTED TEAYNLRFGE PKLLGRDLQF AIDLGLSETE SSYSEYDTKE VVFRPSITFD
ASETTSLQLR YGFEQDEMES RGLDSNNQPL VGPVLQREIA EGKRTTSSIG ATFTYDSRRT
GLNPTAGFLV QSGIDYAGLG GDNEYIRATS KIVAQKLVFN EEVTLRATVE AGYLGWLGDN
RSRTIDRFLL TSDTLRGFEP GGIGPRDMSG SYDDALGGNL YAVARFDAEF PLGLPEELGL
RGGLFYDVGN LWGLEDSNAD FGSNVVGRDG SFRHVVGFSL LWTTGLGPLR FNFSKALVKE
DFDKERNFDL TIQARF
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