| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1391 |
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| Symbol | |
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| ID | 4075884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1484388 |
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| End bp | 1485740 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006701 |
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| Product | tRNA (uracil-5-)-methyltransferase Gid |
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| Protein accession | YP_613386 |
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| Protein GI | 99081232 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.958217 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGCCTT TCATGACACA AGAGCTTCAT ATCGTCGGCG GCGGAATGGC CGGATCGGAA
GCCGCCTGGC AGGCGGCGCA CATGGGCGTT GACGTGGTGA TCCACGAGAT GCGGCCCAAG
GTTGAAACCT TTGCCCATCA GACCGGCAAC CTCGCCGAGA TGGTCTGCTC CAACTCGTTC
CGCTCGGATG ATGACGAGCA GAATGCAGTG GGGCTTTTGC ATTGGGAAAT GCGCGCGGCC
AACAGTCTCA TTATGACCAC CGCAGGTGAA CACCGGCTTC CGGCTGGGGG TGCGTTGGCC
GTGGATCGCG ATCCCTTTGC GGAATCCGTG ACCGCCAAAC TCAAGGCGCT GCCCAATGTG
CGCGTGTCCT ACGAGGAAGT CACAGACCTC CCCACCGAGG GGCACTGGAT CTTTGCCACC
GGTCCCCTCA CCTCGCCCGC GCTTGGCGAA GCGATCCAGC GCGAAACTGG GGCAGAACGG
TTGGCATTCT TTGATGCCAT CGCGCCCATC GTCTATGCCG AGAGTATCGA CATGTCCCAA
GCCTGGATGC AGTCGCGCTA TGACAAGGGC GAAACCGAGG AAGAGCGCAC CGCCTACCTC
AACTGCCCGA TGACCAAGGA CCAATACGAG GCCTTCATCG ACGCGCTTCT GGCCGCAGAC
AAGACCGAGT TCCATGAGGG CGAAACCGCT GGCTATTTCG ACGGCTGCCT CCCGATCGAG
GTGATGGCAG AACGCGGCCG CGAGACCCTG CGCCATGGCC CGATGAAGCC CGTTGGCCTT
ACCAATCCGC ACAAGCCGGA CGAAAAGGCC TGGGCCGTGG TGCAGTTGCG CCGTGACAAT
GCGCTCGGGA CGCTTTTCAA CATCGTTGGT TTTCAGACCA AGATGAAATA CGGCGCGCAA
ACGGATGTCT TCCGGATGAT CCCCGGCCTC GAGAACGCCA AATTTGCGCG GCTCGGCGGC
ATTCATCGCA ACACCTTCCT GAACTCTCCG ACGCTGCTCG ATCATGAGAT GCGCCTGAAA
TCAAAGCCGA ACATTCGGTT TGCCGGACAG GTGACGGGCG TTGAGGGCTA TGTGGAAAGT
GCGGCGATGG GCTTGTTGGC CGGGCGTATG GCCGCCGCTG AGATCCTCGG CAAGGACCTG
CCTCAGGTGC CGCAGGACAG CGCCATGGGG GCCTTGATCC ACCACATCAC CGGCGGCGCC
GAAGCCAAGA CTTTTCAGCC GATGAACGTC AATTTTGGCC TGTTCCGCCC GGTCGAGGGG
CTGAAAGGTG GACGTCGTGG CCGCAAGGAC CGCTACAAGG CCTATACCGA TCGCGCCAAG
GTGGCATGGC AGGAATGGCT CACAAATTTT TGA
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| Protein sequence | MWPFMTQELH IVGGGMAGSE AAWQAAHMGV DVVIHEMRPK VETFAHQTGN LAEMVCSNSF
RSDDDEQNAV GLLHWEMRAA NSLIMTTAGE HRLPAGGALA VDRDPFAESV TAKLKALPNV
RVSYEEVTDL PTEGHWIFAT GPLTSPALGE AIQRETGAER LAFFDAIAPI VYAESIDMSQ
AWMQSRYDKG ETEEERTAYL NCPMTKDQYE AFIDALLAAD KTEFHEGETA GYFDGCLPIE
VMAERGRETL RHGPMKPVGL TNPHKPDEKA WAVVQLRRDN ALGTLFNIVG FQTKMKYGAQ
TDVFRMIPGL ENAKFARLGG IHRNTFLNSP TLLDHEMRLK SKPNIRFAGQ VTGVEGYVES
AAMGLLAGRM AAAEILGKDL PQVPQDSAMG ALIHHITGGA EAKTFQPMNV NFGLFRPVEG
LKGGRRGRKD RYKAYTDRAK VAWQEWLTNF
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