| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1389 |
|---|
| Symbol | |
|---|
| ID | 4075882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1482669 |
|---|
| End bp | 1483523 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638006699 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_613384 |
|---|
| Protein GI | 99081230 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.625706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAG AGGTCTGGAA CACAGAACGC CTGCACGATC ATTTCGCCCA ATCCCTGCGC
GTGAGCGAGA TGTATTATGA CAGCAAGACC GAGCACCAGC GGCTCAAGGT CTTTCAGAAT
GGCACCTTCG GGCGCGTTCT GACGCTGGAC GATGTGGTAC AGACCACCGA AGGCGACAAC
TTCATCTATC ATGAAATGCT GACCCATGTG CCGATCCTGG CACATGGGGC CGCCAAACGT
GTGCTCATCA TCGGTGGCGG CGACGGTGGC ATTGCGCGCG AGGTGCTGAA ACACGCCTCC
GTCGAGCATG TCACCATGGT GGAAATCGAC GCTGGCGTTG TCGATTTTTC CAAGGAATAC
CTGCCGATGC TGAGCCAGGG CGCATTTGAC GATGCGCGTC TCAACCTGGT GATCAATGAC
GGTGCGGTCT TTATGAAAGA GACCGAAGAT AAATTCGACG TCATCATTGT CGACTCGACC
GACCCCATCG GCCCCGGCGA AGTGCTGTTT ACCGATACAT TCTATGGCCA TGCAGCGCGT
GCGCTAACCG AGGATGGCAT CATCGTCACC CAGAACGGCG TGCCGTTCAT GCAGGGCGAT
GAGCTGACCA ACACGATGCG GGCCTTTCAA GCGCTGTTTC AGGATGCGAC CTGCTATCTC
GCGACGATTC CGACCTACGT CGGCGGCCCG ATGGCATTGG GCTGGGGTAG CCACTCCACA
AAGGCGCGTT CGGTGGATCT GACAACGCTT GAAGCTCGGT TTGCAGCGGC AGGCCTTTCG
CCGGACTACT ACACCCCAGA GGTGCACAAG GCGGCATTCG CGCTGCCCGG ATACGTCAAG
AAACTGTTTC CATAA
|
|---|
| Protein sequence | MTKEVWNTER LHDHFAQSLR VSEMYYDSKT EHQRLKVFQN GTFGRVLTLD DVVQTTEGDN
FIYHEMLTHV PILAHGAAKR VLIIGGGDGG IAREVLKHAS VEHVTMVEID AGVVDFSKEY
LPMLSQGAFD DARLNLVIND GAVFMKETED KFDVIIVDST DPIGPGEVLF TDTFYGHAAR
ALTEDGIIVT QNGVPFMQGD ELTNTMRAFQ ALFQDATCYL ATIPTYVGGP MALGWGSHST
KARSVDLTTL EARFAAAGLS PDYYTPEVHK AAFALPGYVK KLFP
|
|---|
| |