| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1362 |
|---|
| Symbol | |
|---|
| ID | 4076379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1456636 |
|---|
| End bp | 1457724 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638006672 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_613357 |
|---|
| Protein GI | 99081203 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATG CCTCGAATCC TCACAGCAAC GACTGCGACA TCTGGGCTTC GCTGCCGGTA
CCCGCGTTTC TGGTCGATGA GCATAATTGC ATTGAAGATG TGAACTCAGC TGCTGAGGGC
TTTATCAACT CCTCGCGCAA GTCCCTGATT GGTAAGAAAA TCTGGCAGAA GGTCGCGATT
GAGTCCTCGA TCGAACTGGC CTTTGACAAG GCTCGAGAGC AGGGCACGCC CCTATTTGTG
AATGATGTCG ATGTCGGCGC CCGCGAACGC GCACCGTTGC AATGTGCTGT GCAGATTGCG
CCGCTCCACG GGCATCCTGG TCATATGCTG CTGATGCTCT CGCCGCGAGA GCTTGCGGGG
CGGATGACGC AGACCCACTC CGCCAAATCG GCCGCGCAAT CGGCGATCGG CATGGCAGAG
ATGCTGGCGC ATGAAATCAA GAACCCTTTG GCGGGGATCA CCGGTGCCGC GCAGCTTTTG
AGCATGAACC TCTCCACGGA TGACCTTGAA CTTACGGATC TAATCGTGAG TGAGAGCCGC
CGGATCGTGA AGCTGCTGGA GCAGGTGGAG CAGTTTGGAA ATCTCTCCGA GCCGGACTTC
AAACCGGTCA ATCTGCATGA TGTTCTGGAC CGCGCGCGCC GCTCCGCGCT GCTGGGCTTC
GGCGCACATA TGAAGATTGT CGAGAAATAC GACCCCTCGC TGCCGCTGGC CTGGGGCGAC
CCGGATCAGC TGTTGCAGGT GGTTTTGAAC CTTCTCAAGA ATGCCTCAGA GGCCGCAGGC
AGCGCGGGTG GCACCATTAC GGTACGCACC TTTTATGAAC ACTCCTTCCG CCTGCGTCGC
AGCGACGGAC AGGGCAAGCT GCTGCCCTTG CAGATCGAGA TCAGCGACGA TGGGCCAGGG
CTGCCGGAGA AGATCCGCGA CGATATCTTT GAGCCTTTTG TCTCTGGCAA GGAGAACGGA
ACAGGTCTTG GCCTGGCCTT GGTCAGCAAG ATCATCGGCG ACCATAACGG TTGGATTTCC
GTGCGCTCAG AGCCCGGCAA CACGACCTTC AGACTGTCGC TTTCGCGCGT TCCGCGAGAG
CAGAAATAA
|
|---|
| Protein sequence | MNDASNPHSN DCDIWASLPV PAFLVDEHNC IEDVNSAAEG FINSSRKSLI GKKIWQKVAI
ESSIELAFDK AREQGTPLFV NDVDVGARER APLQCAVQIA PLHGHPGHML LMLSPRELAG
RMTQTHSAKS AAQSAIGMAE MLAHEIKNPL AGITGAAQLL SMNLSTDDLE LTDLIVSESR
RIVKLLEQVE QFGNLSEPDF KPVNLHDVLD RARRSALLGF GAHMKIVEKY DPSLPLAWGD
PDQLLQVVLN LLKNASEAAG SAGGTITVRT FYEHSFRLRR SDGQGKLLPL QIEISDDGPG
LPEKIRDDIF EPFVSGKENG TGLGLALVSK IIGDHNGWIS VRSEPGNTTF RLSLSRVPRE
QK
|
|---|
| |