Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1342 |
Symbol | |
ID | 4075913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1429486 |
End bp | 1430259 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638006652 |
Product | 3-hydroxybutyrate dehydrogenase |
Protein accession | YP_613337 |
Protein GI | 99081183 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGTCA AAGGTAAAAC CGCAGTGATC ACCGGGTCCA ATTCCGGAAT CGGTCTGGGT GTCGCCCGGG AATTGGCCAA GGCTGGCGCC AATGTTGTGT TGAACTCTTT CACCGATCGC GATGAAGACC ACGCCATCGC CGCCGAGATC GGCAAGGAAT TTGGAGTGGA GGCGCGTTAT ATTCAGGCGG ATATGTCCAA AGCGGAGCAA TGCCGCGCGC TGATCGAGAC GGCGGGCCAA TGCGATATTC TTGTGAACAA TGCCGGCATC CAGCATGTTG CCCCGATTGA CAGCTTCCCC ACCGAAAAAT GGGACGCGAT CATTGCGATC AACCTCACCT CTGCGTTTCA CACCACGGCG GCGGCCCTGC CGATGATGCG CGCGGCCGGT TGGGGCAGGG TGGTAAACAT CGCCTCGGCC CATGGGCTGA CGGCCTCTCC CTATAAATCG GCCTATGTCG CGGCCAAACA CGGGATTGTG GGCATGACAA AAACCGTTGC GCTTGAGACC GCCGAAGAGC CTATCACCTG CAACGCGGTC TGTCCGGGTT ATGTGCTGAC CCCATTGGTG GAGGCGCAAA TCCCTGACAC CATGGAGAAA TACAACATGG GGCGCGAAGA GGTCATCAAG AAGGTGATGC TCGAACGCCA GCCCTCGCGA GAGTTTGCCA CCGTCGAACA ACTGGGCGGG ACCGTGAATT TCCTCTGCTC GGATGCGGCC AAGCAAATCA CCGGAACCAC CATCAGCGTC GACGGCGGCT GGACCGCACT CTGA
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Protein sequence | MSVKGKTAVI TGSNSGIGLG VARELAKAGA NVVLNSFTDR DEDHAIAAEI GKEFGVEARY IQADMSKAEQ CRALIETAGQ CDILVNNAGI QHVAPIDSFP TEKWDAIIAI NLTSAFHTTA AALPMMRAAG WGRVVNIASA HGLTASPYKS AYVAAKHGIV GMTKTVALET AEEPITCNAV CPGYVLTPLV EAQIPDTMEK YNMGREEVIK KVMLERQPSR EFATVEQLGG TVNFLCSDAA KQITGTTISV DGGWTAL
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