Gene TM1040_1332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1332 
Symbol 
ID4075903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1418119 
End bp1420857 
Gene Length2739 bp 
Protein Length912 aa 
Translation table11 
GC content59% 
IMG OID638006642 
ProductDNA gyrase subunit A 
Protein accessionYP_613327 
Protein GI99081173 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGATA CGCCGGAAAC CCCTGAAAAC CCTGACGAAA ACCTACCTCA GCGTCCATCA 
TACGATGGTC CGACGGTCTC CATCGAATCC GAGATGCGCA ACTCGTATCT CGACTATGCG
ATGTCGGTCA TCGTCAGTCG CGCCATCCCC GATCTTCGGG ATGGTCTGAA GCCGGTCCAC
CGCCGGATCC TCTATGCGAT GCATGAGACC GGAAACAGCC ACGACAAGGC CTACCGCAAG
TCGGCGCGTC CCGTTGGCGA CGTGATGGGT AAGTACCACC CGCATGGCGA CAGCGCGATC
TATGACGCCC TTGTCCGTAT GGCGCAGGAC TTCTCCATGT CCCTGCCGCT GCTGGACGGC
CAGGGCAACT TTGGCTCCAT GGACGGCGAT AACCCGGCTG CGATGCGCTA TACCGAAGTG
CGCATGGACA AGCCTGCGGC CTTCATGCTC GCCGATATCG AAAAAGAAAC GGTTGATTTT
CAGGACAACT ACGACGGCAA GGACAAGGAA CCCACTGTTC TGCCAGCACG TTTCCCGAAT
ATGCTGGTCA ATGGCGCCGG GGGTATCGCG GTGGGGATGG CCACCAATAT TCCGCCGCAC
AACCTTGGCG AAGTGGTGGA TGCGACGCTT GCGCTGATCG AAGATCCCGA TCTGACATCC
GAGCAGCTCA TCGAATATGT GCCGGGACCG GATTTTCCGA CCGGCGGCGT GATGCTGGGC
CGATCGGGAG CGCGCAAAGC CTATCTTGAG GGGCGCGGCA GCGTCATCAT TCGCGCAAAA
ACCCGCGTCG AAGAGATCAG GAAAGATCGC TATGCTATTG TAGTTGATGA GATTCCCTAT
CAGGTCAACA AAGCGTCCAT GATCGAGAAA ATCGCCGAAC AGGTGCGAGA GAAGCGCATC
GAAGGCGTGG CACATGTGCA GGACGAGTCC GACCGCAACG GTGTGCGCGT GGTCGTCGAA
CTGAAGCGCG ACGCGACACC CGAGGTGGTT CTGAACCAGC TTTATCGCTT TACGCCGATG
CAGACCTCTT TTGGCTGCAA CATGCTGGCG CTGAACGGCG GTCGCCCCGA GCAGCTGACC
CTGCGCAAAT TCCTTACATC TTTCATCGAC TTCCGCGAGG ATGTTGTCGC ACGTCGCACC
GCGTATAACC TGCGCAAGGC ACGCGAGCGC AGCCACATCC TGTGTGGCTT GGCGGTGGCA
GTGTCCAACG TCGATGAGGT CGTCGCCACC ATCCGCTCCT CTGCGGATGC GGCCGAGGCC
CGTCACAAGC TGATGACTCG TCGCTGGCCT GCGGCAGATA TTGCCGGCTA CATTCGCCTG
ATCGATGATC CGACCCACAC GATGAACGAC GACGGGACCT ATAACCTCTC TGAGGTACAG
GCCCGCGCGA TCCTCGAACT CCGGCTGCAA CGCCTCACCC AACTGGGGGT CAAGGAAGTC
ACCGACGAGC TTGAAGAACT GGCAGGTAAA ATCAAGGAAT ACCTTGAGAT TCTATCGTCA
CGCGAACGTA TCATGAGCAT CATCGCCGAT GAGCTTGCCG AGGTCCGCGA GAGCTTTGCC
GTGCCGCGTC GCACCGAGAT CGTCGACTGG TCCGGCGACA TGGAGGACGA GGATCTGATC
GAGCGCGAGG ACATGGTCGT GACCGTGACC TCTGGTGGCT ACATCAAGCG TACGCCGCTC
GCCGATTTCC GCGCCCAGAA ACGTGGCGGC AAAGGGCTGT CCGGGATGCA GACCAAAGAA
GAGGATGTGG TGACCACGCT CTTTGTGGCG AATACCCACA CGCAGCTTCT GTTCTTTACC
ACCGACGGGA TGGTTTACAA GCTTAAGACC TGGCGCCTGC CGCAAGGGGG ACGGACCTCC
AAGGGCAAGG CGATCGTCAA CATTCTGCCA ATCCCCACGG GCGTCTCCAT CGCGGCGATC
ATGCCAGTCG ATCGGGATGA AAAGGAATGG GATGATCTGC AGATCATGTT CGCGACCTCT
GCTGGAACTG TGCGTCGTAA CCGGTTGTCC GACTTCACAA ATGTGATGCG CAACGGCAAG
ATCGCGATGA AGTTCGAGGA TGAGAACCAA GGCACCAAGC TGATCAATGC GCGCATCTGC
TCGGAAGATG ACGACATCAT GCTGGTGACC AATACCGGTC GCGCGATCCG CTTCCCTACC
ACTGAGGTGC GCGTCTTCAA CTCTCGCAAC TCGGTCGGTG TACGCGGGAT CAAGCTTGGC
GAGGACGACG AGGTTGTCTC CATGTCGGTG ATCCGTCACT CGAAATACAC GCCCGAGCAG
CGCTCCGCCT ATCTCAAGAT GCGTCGCGCC ATGGCGGGTC TGACGGATGA GGATGCCTCT
GACGAGGATG CGGTTGAGGA TCCGAATTTC TCTACCGAGC TCTTTGCAGA GATGTCTGCG
GCGGAAAACC TGATCCTGAC CATTACTGCA GGCGGGTCCG GTAAGCTCTC GTCCAGTCAC
GATTATCCTG TGCGCGGGCG TGGCGGAATG GGCGTCACCG CGATGGACAA AGCCATGCGC
GGCGGGGCAT TGGTGGCCTC CTTCCCGGTA GAACTGGATG ACCAGATCAT GCTGGCAACA
TCCAAGGGGC AGTCGATCCG CGTGCCGGTT GATGGCATTT CCTTCCGGTC TCGTTCTGCG
GGCGGCGTGC GGATCTTCAA CACCGGTAAG GGTGAAGAGG TCGTCTCGGT CGCTTGGATT
GCGGACAACG GTGACGACGA AGAAACCGTG GAAGAATAA
 
Protein sequence
MSDTPETPEN PDENLPQRPS YDGPTVSIES EMRNSYLDYA MSVIVSRAIP DLRDGLKPVH 
RRILYAMHET GNSHDKAYRK SARPVGDVMG KYHPHGDSAI YDALVRMAQD FSMSLPLLDG
QGNFGSMDGD NPAAMRYTEV RMDKPAAFML ADIEKETVDF QDNYDGKDKE PTVLPARFPN
MLVNGAGGIA VGMATNIPPH NLGEVVDATL ALIEDPDLTS EQLIEYVPGP DFPTGGVMLG
RSGARKAYLE GRGSVIIRAK TRVEEIRKDR YAIVVDEIPY QVNKASMIEK IAEQVREKRI
EGVAHVQDES DRNGVRVVVE LKRDATPEVV LNQLYRFTPM QTSFGCNMLA LNGGRPEQLT
LRKFLTSFID FREDVVARRT AYNLRKARER SHILCGLAVA VSNVDEVVAT IRSSADAAEA
RHKLMTRRWP AADIAGYIRL IDDPTHTMND DGTYNLSEVQ ARAILELRLQ RLTQLGVKEV
TDELEELAGK IKEYLEILSS RERIMSIIAD ELAEVRESFA VPRRTEIVDW SGDMEDEDLI
EREDMVVTVT SGGYIKRTPL ADFRAQKRGG KGLSGMQTKE EDVVTTLFVA NTHTQLLFFT
TDGMVYKLKT WRLPQGGRTS KGKAIVNILP IPTGVSIAAI MPVDRDEKEW DDLQIMFATS
AGTVRRNRLS DFTNVMRNGK IAMKFEDENQ GTKLINARIC SEDDDIMLVT NTGRAIRFPT
TEVRVFNSRN SVGVRGIKLG EDDEVVSMSV IRHSKYTPEQ RSAYLKMRRA MAGLTDEDAS
DEDAVEDPNF STELFAEMSA AENLILTITA GGSGKLSSSH DYPVRGRGGM GVTAMDKAMR
GGALVASFPV ELDDQIMLAT SKGQSIRVPV DGISFRSRSA GGVRIFNTGK GEEVVSVAWI
ADNGDDEETV EE