Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1274 |
Symbol | |
ID | 4077434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1372783 |
End bp | 1373496 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638006582 |
Product | ABC transporter related |
Protein accession | YP_613269 |
Protein GI | 99081115 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.684158 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAC CCTTTTTGAT TGGCGACAGC ATGACGGGTG GCTATGGCAA GGGGCCGGAC ATCCTGCATG ATTGCACCAT CGCCGTGAAC CCGGGCGAAA TCGCCGTGAT CGTGGGCCCC AATGGCGCGG GAAAATCCAC CGCCATGAAA GCCGTCTTTG GTATGCTGAA CGTGCGCTCC GGCGCGGTAC GTCTGGGCGG AGAAGACATT ACCAGCCTCA GCCCGCAAGA GCGCGTGATC AAGGGCATGG GTTTTGTGCC GCAAACGAGC AATATCTTCA CCTCGATGAC GGTCGAGGAA AACCTCGAGA TGGGCGCCTT TATCCGCACC GATGATTATT CCGACACCAT GGAGCAGGTC TATCACTTGT TTCCGATCCT GAAGGACAAA CGCCATCAGG CGGCCGGGGA ATTGTCGGGC GGTCAGCGTC AGCAGGTGGC CGTGGGCCGC GCATTGATGA CCAAGCCCAA GGTTCTGATG CTGGATGAGC CGACCGCTGG CGTGTCGCCC ATCGTGATGG ACGAGCTGTT TGACCGCATC ATCGAGGTTT CCCGCACCGG GCTGCCGATC CTGATGGTGG AACAAAACGC CAAGCAAGCG CTTGAAATCG CGGACAAAGG CTATGTCCTC GTTCAAGGCG CGAACGCCTA TACGGGCACC GGTCAGGAAC TGCTGGCCGA TCCCGAAGTA CGCAAATCTT TCCTGGGAGG CTAA
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Protein sequence | MSEPFLIGDS MTGGYGKGPD ILHDCTIAVN PGEIAVIVGP NGAGKSTAMK AVFGMLNVRS GAVRLGGEDI TSLSPQERVI KGMGFVPQTS NIFTSMTVEE NLEMGAFIRT DDYSDTMEQV YHLFPILKDK RHQAAGELSG GQRQQVAVGR ALMTKPKVLM LDEPTAGVSP IVMDELFDRI IEVSRTGLPI LMVEQNAKQA LEIADKGYVL VQGANAYTGT GQELLADPEV RKSFLGG
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