Gene TM1040_1274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1274 
Symbol 
ID4077434 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1372783 
End bp1373496 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content59% 
IMG OID638006582 
ProductABC transporter related 
Protein accessionYP_613269 
Protein GI99081115 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.684158 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAC CCTTTTTGAT TGGCGACAGC ATGACGGGTG GCTATGGCAA GGGGCCGGAC 
ATCCTGCATG ATTGCACCAT CGCCGTGAAC CCGGGCGAAA TCGCCGTGAT CGTGGGCCCC
AATGGCGCGG GAAAATCCAC CGCCATGAAA GCCGTCTTTG GTATGCTGAA CGTGCGCTCC
GGCGCGGTAC GTCTGGGCGG AGAAGACATT ACCAGCCTCA GCCCGCAAGA GCGCGTGATC
AAGGGCATGG GTTTTGTGCC GCAAACGAGC AATATCTTCA CCTCGATGAC GGTCGAGGAA
AACCTCGAGA TGGGCGCCTT TATCCGCACC GATGATTATT CCGACACCAT GGAGCAGGTC
TATCACTTGT TTCCGATCCT GAAGGACAAA CGCCATCAGG CGGCCGGGGA ATTGTCGGGC
GGTCAGCGTC AGCAGGTGGC CGTGGGCCGC GCATTGATGA CCAAGCCCAA GGTTCTGATG
CTGGATGAGC CGACCGCTGG CGTGTCGCCC ATCGTGATGG ACGAGCTGTT TGACCGCATC
ATCGAGGTTT CCCGCACCGG GCTGCCGATC CTGATGGTGG AACAAAACGC CAAGCAAGCG
CTTGAAATCG CGGACAAAGG CTATGTCCTC GTTCAAGGCG CGAACGCCTA TACGGGCACC
GGTCAGGAAC TGCTGGCCGA TCCCGAAGTA CGCAAATCTT TCCTGGGAGG CTAA
 
Protein sequence
MSEPFLIGDS MTGGYGKGPD ILHDCTIAVN PGEIAVIVGP NGAGKSTAMK AVFGMLNVRS 
GAVRLGGEDI TSLSPQERVI KGMGFVPQTS NIFTSMTVEE NLEMGAFIRT DDYSDTMEQV
YHLFPILKDK RHQAAGELSG GQRQQVAVGR ALMTKPKVLM LDEPTAGVSP IVMDELFDRI
IEVSRTGLPI LMVEQNAKQA LEIADKGYVL VQGANAYTGT GQELLADPEV RKSFLGG