| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1253 |
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| Symbol | |
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| ID | 4077647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1348352 |
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| End bp | 1349239 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638006561 |
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| Product | RpiR family transcriptional regulator |
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| Protein accession | YP_613248 |
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| Protein GI | 99081094 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0224504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCCAA CCCTCAGAAA TAAAACGATA ACACGCCTCA AAGAGGAGCT TTCGGACCTG
TCACCGCGCC TCCAGGTGGC CGCAAAATAC ATCGTGGATC ACCCGGCCGA CTTTGGGCTC
GACTCGATCC GCGACACGGC ACGCAAGGCC GAGGTTTCGA CCTATACCCT GGTGCGGATC
TCCGAACGGC TCGGCTTTGA CAGCTACGAG GACATGCGGG ATCCGTTTCG TGTCGCGCTG
GTGGCCCCAA CACAGTTTGT CGATGCGCCT GAATGGATCA ACCGATGGCG CGAAAGTGGA
GAACTTGGCC AGAAACAGGC CGAAGCGGCG CTGAATTCGA TGGCGATTGT CCAACGCAGC
TTGGAGGGGC AGAATCTAAG GCAATTGCAG CGGGTGGCCG AGATGCTCCT TGGTGCCAAG
AATGTCTATC TGACCGCTGT GCGCGCAAGC TATTCGATTG CCTACTATTT TCATTACGTC
GGCCGCATGG CGCTGCCGTC GCTGCAACTG ATTCCTCGCC ATATCAACAG CGCCATTGAT
GAGTTGAACT ATGCCGACGA AGGCGACGTG ATGATCGCGA TCACGCTCAC GCCTTATTCG
CGCGAGACCA TCGAAGCCTG TGAATTTGCA CGTAAAAAGG GGGTCAAACT GGTCATGATC
TCCGATAGTG AGGTGATTTC TTCAAAATTC ACCCCTGAAG AAACTCTTGT TGCGTCTACA
TTGAGCACAC ATCACTTTGG GTGTTACACG GGGGTTATGG CGGTGGCCGA AAATCTTGTG
TCATTGCTGG TGGCTTTGGG CGGTCAGGAC GTGAAGGACA GAATCACGTC TTATGAGACC
CTGCGCAAGG ACAACAACGC CTACTGGGTG GCGAAGAAAA AACATTAG
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| Protein sequence | MDPTLRNKTI TRLKEELSDL SPRLQVAAKY IVDHPADFGL DSIRDTARKA EVSTYTLVRI
SERLGFDSYE DMRDPFRVAL VAPTQFVDAP EWINRWRESG ELGQKQAEAA LNSMAIVQRS
LEGQNLRQLQ RVAEMLLGAK NVYLTAVRAS YSIAYYFHYV GRMALPSLQL IPRHINSAID
ELNYADEGDV MIAITLTPYS RETIEACEFA RKKGVKLVMI SDSEVISSKF TPEETLVAST
LSTHHFGCYT GVMAVAENLV SLLVALGGQD VKDRITSYET LRKDNNAYWV AKKKH
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