| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1246 |
|---|
| Symbol | |
|---|
| ID | 4076361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1340409 |
|---|
| End bp | 1341689 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006554 |
|---|
| Product | SufBD |
|---|
| Protein accession | YP_613241 |
|---|
| Protein GI | 99081087 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0719] ABC-type transport system involved in Fe-S cluster assembly, permease component |
|---|
| TIGRFAM ID | [TIGR01981] FeS assembly protein SufD, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACTTC CCGAGCTGAA ACAAACAACG ACGGAGGCAC GCCTGGCGGC GTTGTCCTTG
CCCGAAGGTG GATGTCTTGA GGCGGCGCGT CGCGCCGCCG TGGCCCGGGT TCAGACCATG
GGGCTGCCGG ACCGTCGGGA TGAGTATTGG AAATACACCC GCCCGGACAC GCTGACCGCG
GCAGACGCGC CTGCGGCTGC CGTTTTCGAC AGTGGCGAGG CGCCGATGTT CGACAACTTC
GACCGGCTGC GCATCGTTTT TGTAGATGGC GTGTTTGACG CAGAGGCCTC TGATGACCTC
GCACTTGAGG GTGTGAGCAT CGAGCGTTTG GCTGACATAG ATCGCAAAGA TATCCATTGG
GCCAAGGACA TCTACGGTGT TCTTGAAGCG CGTGGCCAAT CCCCGGTGGA GCGTCCTCTG
GCAGCGCTCA ACACGGCTTT TGCGACGGAT GGCGTGGTCA TCCACGTCAC CGGCAAGCCG
TCCAAGCCGA TCAACTTGGT CTATCAGCAC GCGAGCGAAA ACTCGGATGC GATCCTGCAC
CATGTGATCA AAGTCGACAG CGGGGCCGAA GCGACGATCC TCGAAAATGG CCCAGCCGCG
TCTCGCTTTA ACAAAGCGAT GGAAATCGAC ATCGCTGACA CGGGCAAGCT GCATCTGGTG
CGCGCCCAGG GGCGCGATCA CGAGCGCCGC GCCGCAACGC ATCTCTTTGC GCGGCTTGGG
ACGGAGTCCG TTTTCAAGAG CTTTACGCTG ACGGTGAACG GTGTGCTGAC GCGCAACGAG
GCCGTGGTCG AATTCCTCGG TGATGACGCT GTGGCGCATC TGGCTGGTGC CTGTGTTGGT
GATGGTGATT TTCACCACGA TGACACCGTG TTTGTTACGC ATGACGCGGT CAATTGTGAG
AGCCGCCAGG TCTTTAAGAA GGTCCTGCGC AACGGCGCCA CCGGCGTTTT CCAGGGTAAG
ATCCTTGTGA AGGAAGGCGC GCAAAAGACT GATGGATATC AGATTTCTCA GTCTTTGCTC
TTGGATGACG ACAGCCAGTT CCTCGCCAAG CCAGAGCTTG AGATCTACGC AGACGACGTG
GCCTGTTCGC ACGGGTCCAC CTCCGGTGCC ATTGATGAGG ATGGTTTGTT TTACCTGCGT
TCTCGTGGCG TGCCTGAGGC CGAGGCCACT GACCTGATGA CGCTGGCGTT CCTGGCCGAA
GCGGTTGAGG AAATCGAAGA CGAAGAGATC GCCGCAAGCA TCAACGACCG CCTTTACGGC
TGGCTCGCAC GGCGGCGCTG A
|
|---|
| Protein sequence | MGLPELKQTT TEARLAALSL PEGGCLEAAR RAAVARVQTM GLPDRRDEYW KYTRPDTLTA
ADAPAAAVFD SGEAPMFDNF DRLRIVFVDG VFDAEASDDL ALEGVSIERL ADIDRKDIHW
AKDIYGVLEA RGQSPVERPL AALNTAFATD GVVIHVTGKP SKPINLVYQH ASENSDAILH
HVIKVDSGAE ATILENGPAA SRFNKAMEID IADTGKLHLV RAQGRDHERR AATHLFARLG
TESVFKSFTL TVNGVLTRNE AVVEFLGDDA VAHLAGACVG DGDFHHDDTV FVTHDAVNCE
SRQVFKKVLR NGATGVFQGK ILVKEGAQKT DGYQISQSLL LDDDSQFLAK PELEIYADDV
ACSHGSTSGA IDEDGLFYLR SRGVPEAEAT DLMTLAFLAE AVEEIEDEEI AASINDRLYG
WLARRR
|
|---|
| |