Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1232 |
Symbol | alaS |
ID | 4076347 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1326722 |
End bp | 1329430 |
Gene Length | 2709 bp |
Protein Length | 902 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638006540 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_613227 |
Protein GI | 99081073 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.224866 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGCGA TAAACCGCTT TGGACTGTTC CAATCACATC TAGAGAGCCG CGTTGACATG CCCAGCTTGA ACGACATCCG GTCGACCTTT CTGAACTACT TTGCAAAGCA GGGCCATGAG GTCGTGGATT CCAGCCCGTT GGTTCCGCGC AATGACCCGA CGCTCATGTT CACCAACTCC GGCATGGTGC AATTCAAAAA TTGCTTCACC GGTGTGGACC GGCGTGACTA TGTCCGCGCC ACCACGGCGC AAAAATGTGT GCGTGCTGGC GGCAAGCACA ATGACCTCGA CAATGTCGGC TATACTGCCC GCCATCACAC GTTTTTCGAG ATGCTCGGCA ACTTCTCCTT TGGGGATTAT TTCAAAAACG AGGCGATCCC CTTTGCTTGG GAGCTGATCA CCGGCGAGTT TGATATTCCC AAGGATAAAC TCTACACGAC CGTCTATCAC ACAGACGACG AAGCCTTTGA AATCTGGAAG AAAGTAGGCG TCCCGGAGGA GCGGATCATT CGGATTGCGA CCTCTGACAA CTTCTGGCAG ATGGGCGACA CGGGCCCCTG TGGTCCCTGC ACCGAGATTT TCTATGACCA CGGCGATCAC ATCTGGGGTG GCCCTCCGGG CTCGCCCGAG GAAGATGGCG ACCGGTTCAT CGAAATCTGG AACCTTGTTT TTATGCAGAA CGAGCGCTTT GCGGATGGGT CCATGGTGGA CCTCGACATG CAGTCGATCG ACACCGGCAT GGGGCTGGAG CGGATTGCGG CTCTCTTGCA GGGCACCCAT GACAACTATG AGACCGATCT TTTCAAATAT CTCATCGAGG CCTCGGCCAC GGTGACCAAG AGCGAGCCCT ATGGTGACCA GAACGTGCAT CACCGCGTCA TCGCCGACCA CTTGCGGTCC TGTTCCTTCC TGATTGCCGA AGGTGTGCTG CCCTCCAACG AGGGACGGGG CTATGTGCTC CGCCGCATCA TGCGTCGCGC GATGCGCCAT GCCTCTCTCT TGGGGGCAAC CGATCCGGTG ATGCACAAGC TGGTGCCCGC GCTCGTGAGC CAGATGGGAG CGGCCTATCC GGAACTGGGG CAGGGGCAGG CGCTCATTGA AGAGACCTTC GAGCAGGAAG AAACCCGTTT TCTCAAGACC TTGGATCGCG GCCTTAAGCT CCTGGACGAT GCGTCCGGTG ATCTAGAAAA AGGCGATGTC CTGCCGGGCG AGACGGCCTT CAAGCTCTAT GATACCTTCG GTTTCCCGCT CGACCTCACT CAGGATGCGC TGCGCGCGAA GGGCATCGAG GTGGACACCG ACGGCTTTGA CGCCGCGATG AAAGCCCAGA AAGAGCAGTC GCGCGCCGGC GGCATTGGTC TGGGCGATGC GACCGATGTC AAAGTCTACT TTGATATCGT CGACGCCGAG GGCACGACCG AATTCCTTGG CTATGAGACG GAAAAAGCCG AGGGGCAGAT CGTGGCGCTG GTCAAGGACG GCGCCAGGGT CGACAGTGCC AAAGCGGGCG AGAGCGTTCA GATCATCCTG AACCAGACAC CTTTTTATGG CGAGAGCGGT GGCCAGGTTG GCGACAGCGG TATGCTCACG GTTGAGGGCG GCGCTGCGCG GATCACCGAC ACCAAGAAGG TCGAAGGCCT GTTCCTTCAC ATCGCAGAAG TCACCGAGGG CGAGATCGCT GTCGGCAGCG GTGCAGCGAT GGAAGTCGAC CACGTCCGCC GCAGCCAGAT CCGGGCGAAC CACTCTGCCA CCCACCTGCT GCACGAGGCG CTGCGCAATG CGCTTGGCGA TCACGTTGCC CAGAAAGGCT CGCTCAACGC CGCAGATCGT CTGCGCTTTG ACTTTAGTCA CAACAAGGCG GTAAGCGCAG AGGACTTGTC GAAGATCTCC GCAGAAGTGA ATGATTTCAT TCGCCAAAAC TCGGCCGTCA GCACCCGCAT CATGACGCCC GATGATGCCC GCGCCCTGGG CGCTCAGGCG CTCTTTGGTG AGAAATACGG CGAAGAGGTT CGCGTTGTCT CCATGGGGCG CGCACCGACT GGCAAGGGTG CGGATGGCGA AACCTACTCC ATCGAACTCT GCGGCGGCAC CCATGTGAAA CAGACTGGTG ACATTGGCAC CTTTGTGATC TTGGGTGACA GCGCATCCTC GGCTGGCGTG CGCCGGATCG AGGCGCTCAC GGGCGCGGCC GCTTTTGCGC ATCTGGAACG CGAAGCCGGG CGGATGGCGG AGGTTGCCGC CTCGCTCAAG GCACAGCCTG CGGATGTGAT GGAACGGCTG AAGGCGCTTA TGGACGAGCG CAAGGCCCTG CAGAACGAGA TTGCGACCCT CAAGCAGCAG ATCGCCATGG GCGGCGGCGC CGGTGGCGGT GCTGAAGCCA AAGAGATCGG CGGCAAGACC TTTCTCGGTC AGGCGCTGCA GGGAGTCTCG GGCAAGGATC TGCGTGGGCT GATAGATGCG CATAAGCAGA AAATCGGCTC TGGCGTGATC CTGCTGATTG CCGAGGATGA CGGCAAGGTC GCCGTTGCTG CCGGGGTCAC CGATGATCTG ACCGGCGAAA TTTCTGCTGT GGATGTGCTC AAGGCGGCTG TGCCAGCTGT GGGCGGCAAA GGGGGCGGTG GTCGTCCCGA CATGGCGCAG GGCGGCGGTA AGGATTTCTC CGGCGCCGAC GAGGCCATCA AGGCTGCCGA AGCTCTTTTG AAAGGATAA
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Protein sequence | MGAINRFGLF QSHLESRVDM PSLNDIRSTF LNYFAKQGHE VVDSSPLVPR NDPTLMFTNS GMVQFKNCFT GVDRRDYVRA TTAQKCVRAG GKHNDLDNVG YTARHHTFFE MLGNFSFGDY FKNEAIPFAW ELITGEFDIP KDKLYTTVYH TDDEAFEIWK KVGVPEERII RIATSDNFWQ MGDTGPCGPC TEIFYDHGDH IWGGPPGSPE EDGDRFIEIW NLVFMQNERF ADGSMVDLDM QSIDTGMGLE RIAALLQGTH DNYETDLFKY LIEASATVTK SEPYGDQNVH HRVIADHLRS CSFLIAEGVL PSNEGRGYVL RRIMRRAMRH ASLLGATDPV MHKLVPALVS QMGAAYPELG QGQALIEETF EQEETRFLKT LDRGLKLLDD ASGDLEKGDV LPGETAFKLY DTFGFPLDLT QDALRAKGIE VDTDGFDAAM KAQKEQSRAG GIGLGDATDV KVYFDIVDAE GTTEFLGYET EKAEGQIVAL VKDGARVDSA KAGESVQIIL NQTPFYGESG GQVGDSGMLT VEGGAARITD TKKVEGLFLH IAEVTEGEIA VGSGAAMEVD HVRRSQIRAN HSATHLLHEA LRNALGDHVA QKGSLNAADR LRFDFSHNKA VSAEDLSKIS AEVNDFIRQN SAVSTRIMTP DDARALGAQA LFGEKYGEEV RVVSMGRAPT GKGADGETYS IELCGGTHVK QTGDIGTFVI LGDSASSAGV RRIEALTGAA AFAHLEREAG RMAEVAASLK AQPADVMERL KALMDERKAL QNEIATLKQQ IAMGGGAGGG AEAKEIGGKT FLGQALQGVS GKDLRGLIDA HKQKIGSGVI LLIAEDDGKV AVAAGVTDDL TGEISAVDVL KAAVPAVGGK GGGGRPDMAQ GGGKDFSGAD EAIKAAEALL KG
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