Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1228 |
Symbol | |
ID | 4075936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1321904 |
End bp | 1324213 |
Gene Length | 2310 bp |
Protein Length | 769 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638006536 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_613223 |
Protein GI | 99081069 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGGTC GCTCTTCTTC GATTGCCCCC AGCCTGAAGA TCCAGACGCC GGAGCAGGCG CGCTTGGCGG CGACCTTTCT GCTATCGGCG CTGTTGATCG TGTTGCCGTG GCTGTTGCCG GTGCCGGAGT GGATCGGGCG GGCGCTGGTG GCAGTCGGGC TGACGCTGGG CGGTGTCTCT GCGATGATCT TGATACAGAC CCGGGTCCGC ATGGGCGCGC GCACGATGGC GAGCGAGTTG CTGACGGGCT TTATCGACAA GGACGCATCC GCCAGCTTCG TCACCGACGA GGACGGGGTG ATCCATGCCT GCAACACCGC TGCGCTCAAG CGATTTGAGG GCAGCGAAAG TGATACGATC TCGGGCACAT TGCGCTCGGT TCTGGCCAAT CCGTCCGCGG TGCTCTTCCG TTTGCAGAGC CGTGCCAAGC TCGAAGGGTC GGCCCGCGAG GACATCGTGA CGCGGCGTGG AAACGTCCGC ATTGCGGTGC ATGAGATGGC CAATGGCAGC TTCTTGTGGC GAGTTGAGGA CATGGGCGAA CGCCCCTCCG GGCGCACGGC GGATGCCAGC CCGGTGCCGA TGATCTCGGT TGGACGCACG GGCGCCGTCC TGTTCATGAA CGAATCCGCG CGCAGCCTGA TCGGAGAGCG CGTGAAATCG ACAGATCGGC TCTTTACGTC ACTGCCGGTG ATCCCGGGGC GGATCAACAC GATCATGACC AAAAGCGGCC CCGTTGAGGT GCTGGTCAGC GAACACGCGC GCGGCCAGGG GCGCAGCGAA ATCTACTTCA TGAAAGCCGT TGTCGAGGAC AGTGGGCCTC ATACCGGGTT CGAGAGCCTG CCGGTGCCGC TCCTCAAGGT TCGCGCGGGT GGCGAGGTGA TGGCGGTCAA CCGCATGGCC ATGCGGCTTT TGGGCATCGA AGAAGCCGAA GGCGTGCAGT TGGGGCAATT GATGGAGGGC CTTGGCCGCC CCATGAACGA TTGGCTGCAA GAAACGTCCA AGGGGCTTGC GCCGCATAAG TCCGAGTTCC TGCGGGTGTC ACGCGACGAC AAGGAAGTCT TTGTGCAGGT GACGCTCACG CGGATCATCG AGGATGGCGA GACGCTATTG CTGGCGGTTC TGAACGATGC AACCGAGCTG AAAACCCTTG AGGCGCAATT TGTTCAAAGC CAGAAGATGC AGGCGATCGG TCAGCTCGCG GGCGGCGTGG CACATGATTT CAACAATCTT TTGACTGCGA TTTCAGGGCA TTGCGACCTG CTTTTACTGC GTCACGATCA GGGCGATCAG GATTATGGTG ATCTGATCCA GATCCATGAA AACGCCAATC GCGCTGCTGC CTTGGTGAGC CAGTTGCTTG CGTTTTCGCG CAAGCAGACC CTGCAACCCG AGGTGCTCGA TGTGCGCGAG ACGCTCTCGG ATCTGACCCA TCTGCTGAAC CGTCTGGTGG GGGAGAAAGT CTCGCTCACG CTGAGCCATG ACCCGGTTAT GCGCTCCATT CGGGCTGACA AACGCCAGCT TGAACAAGTT CTGATGAACC TCGTGGTGAA TGCGCGGGAC GCGATGCCAC ACGGGGGCGA AATCCGCGTG GAAACTGAGG TAGTAGCGCT CGACACAGCA CTTGAACGCG ATCGCGCCCT TGTGCCGCCG GGCGAGTGGG TCACCATCCA GGTGAGCGAC GAGGGCACAG GGATCTCGCC GGACAAGCTT CAAAAGGTGT TTGAGCCCTT CTACACCACC AAACGCACCG GCGAAGGCAC GGGGCTTGGG CTTTCCACCG CCTATGGCAT CATCAAACAG ACTGGTGGCT TCATTTTTGT GGATTCCGTG CTCAATCAGG GCACCAAGTT CACGCTCTAT TTCCCGGTTT ATCGCAGCGA TGCGTCACAC GACGTCGAAG AAGCGGTCGC ACCGGCCAAG ACCAAGGCAC CGGCAGCACA ACACGGCGAA GGCGTGGTTC TCTTGGTGGA GGACGAAGCT CCGGTTCGGG CCTTTGCATC GCGCGCGCTG CGCATGCGCG GCTATACGGT CCTTGAGGCC GAATCCGCTG AAGAGGCGCT CGACACGCTC GAAGATCCAA ACCTCAGCGT TGATGTCTTT GTGACCGATG TCATCATGCC CGGGATGGAT GGGCCGACTT GGGTGCGGGA AGCCCTCAAA ACCCGGCCCG GCACCAAGGT GGTCTTTGTG TCCGGGTACT CCGAAGGGGC CTTTGGCGAT GCGGAGCCCG ACGTGCCGAA TTCGGTCTTC CTGGCCAAAC CGTTCTCGCT CTCGCAGCTC ACGGAAACCG TTCAGTCTCA ACTTCAGTAA
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Protein sequence | MIGRSSSIAP SLKIQTPEQA RLAATFLLSA LLIVLPWLLP VPEWIGRALV AVGLTLGGVS AMILIQTRVR MGARTMASEL LTGFIDKDAS ASFVTDEDGV IHACNTAALK RFEGSESDTI SGTLRSVLAN PSAVLFRLQS RAKLEGSARE DIVTRRGNVR IAVHEMANGS FLWRVEDMGE RPSGRTADAS PVPMISVGRT GAVLFMNESA RSLIGERVKS TDRLFTSLPV IPGRINTIMT KSGPVEVLVS EHARGQGRSE IYFMKAVVED SGPHTGFESL PVPLLKVRAG GEVMAVNRMA MRLLGIEEAE GVQLGQLMEG LGRPMNDWLQ ETSKGLAPHK SEFLRVSRDD KEVFVQVTLT RIIEDGETLL LAVLNDATEL KTLEAQFVQS QKMQAIGQLA GGVAHDFNNL LTAISGHCDL LLLRHDQGDQ DYGDLIQIHE NANRAAALVS QLLAFSRKQT LQPEVLDVRE TLSDLTHLLN RLVGEKVSLT LSHDPVMRSI RADKRQLEQV LMNLVVNARD AMPHGGEIRV ETEVVALDTA LERDRALVPP GEWVTIQVSD EGTGISPDKL QKVFEPFYTT KRTGEGTGLG LSTAYGIIKQ TGGFIFVDSV LNQGTKFTLY FPVYRSDASH DVEEAVAPAK TKAPAAQHGE GVVLLVEDEA PVRAFASRAL RMRGYTVLEA ESAEEALDTL EDPNLSVDVF VTDVIMPGMD GPTWVREALK TRPGTKVVFV SGYSEGAFGD AEPDVPNSVF LAKPFSLSQL TETVQSQLQ
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