| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1228 |
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| Symbol | |
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| ID | 4075936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1321904 |
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| End bp | 1324213 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006536 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_613223 |
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| Protein GI | 99081069 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGGTC GCTCTTCTTC GATTGCCCCC AGCCTGAAGA TCCAGACGCC GGAGCAGGCG
CGCTTGGCGG CGACCTTTCT GCTATCGGCG CTGTTGATCG TGTTGCCGTG GCTGTTGCCG
GTGCCGGAGT GGATCGGGCG GGCGCTGGTG GCAGTCGGGC TGACGCTGGG CGGTGTCTCT
GCGATGATCT TGATACAGAC CCGGGTCCGC ATGGGCGCGC GCACGATGGC GAGCGAGTTG
CTGACGGGCT TTATCGACAA GGACGCATCC GCCAGCTTCG TCACCGACGA GGACGGGGTG
ATCCATGCCT GCAACACCGC TGCGCTCAAG CGATTTGAGG GCAGCGAAAG TGATACGATC
TCGGGCACAT TGCGCTCGGT TCTGGCCAAT CCGTCCGCGG TGCTCTTCCG TTTGCAGAGC
CGTGCCAAGC TCGAAGGGTC GGCCCGCGAG GACATCGTGA CGCGGCGTGG AAACGTCCGC
ATTGCGGTGC ATGAGATGGC CAATGGCAGC TTCTTGTGGC GAGTTGAGGA CATGGGCGAA
CGCCCCTCCG GGCGCACGGC GGATGCCAGC CCGGTGCCGA TGATCTCGGT TGGACGCACG
GGCGCCGTCC TGTTCATGAA CGAATCCGCG CGCAGCCTGA TCGGAGAGCG CGTGAAATCG
ACAGATCGGC TCTTTACGTC ACTGCCGGTG ATCCCGGGGC GGATCAACAC GATCATGACC
AAAAGCGGCC CCGTTGAGGT GCTGGTCAGC GAACACGCGC GCGGCCAGGG GCGCAGCGAA
ATCTACTTCA TGAAAGCCGT TGTCGAGGAC AGTGGGCCTC ATACCGGGTT CGAGAGCCTG
CCGGTGCCGC TCCTCAAGGT TCGCGCGGGT GGCGAGGTGA TGGCGGTCAA CCGCATGGCC
ATGCGGCTTT TGGGCATCGA AGAAGCCGAA GGCGTGCAGT TGGGGCAATT GATGGAGGGC
CTTGGCCGCC CCATGAACGA TTGGCTGCAA GAAACGTCCA AGGGGCTTGC GCCGCATAAG
TCCGAGTTCC TGCGGGTGTC ACGCGACGAC AAGGAAGTCT TTGTGCAGGT GACGCTCACG
CGGATCATCG AGGATGGCGA GACGCTATTG CTGGCGGTTC TGAACGATGC AACCGAGCTG
AAAACCCTTG AGGCGCAATT TGTTCAAAGC CAGAAGATGC AGGCGATCGG TCAGCTCGCG
GGCGGCGTGG CACATGATTT CAACAATCTT TTGACTGCGA TTTCAGGGCA TTGCGACCTG
CTTTTACTGC GTCACGATCA GGGCGATCAG GATTATGGTG ATCTGATCCA GATCCATGAA
AACGCCAATC GCGCTGCTGC CTTGGTGAGC CAGTTGCTTG CGTTTTCGCG CAAGCAGACC
CTGCAACCCG AGGTGCTCGA TGTGCGCGAG ACGCTCTCGG ATCTGACCCA TCTGCTGAAC
CGTCTGGTGG GGGAGAAAGT CTCGCTCACG CTGAGCCATG ACCCGGTTAT GCGCTCCATT
CGGGCTGACA AACGCCAGCT TGAACAAGTT CTGATGAACC TCGTGGTGAA TGCGCGGGAC
GCGATGCCAC ACGGGGGCGA AATCCGCGTG GAAACTGAGG TAGTAGCGCT CGACACAGCA
CTTGAACGCG ATCGCGCCCT TGTGCCGCCG GGCGAGTGGG TCACCATCCA GGTGAGCGAC
GAGGGCACAG GGATCTCGCC GGACAAGCTT CAAAAGGTGT TTGAGCCCTT CTACACCACC
AAACGCACCG GCGAAGGCAC GGGGCTTGGG CTTTCCACCG CCTATGGCAT CATCAAACAG
ACTGGTGGCT TCATTTTTGT GGATTCCGTG CTCAATCAGG GCACCAAGTT CACGCTCTAT
TTCCCGGTTT ATCGCAGCGA TGCGTCACAC GACGTCGAAG AAGCGGTCGC ACCGGCCAAG
ACCAAGGCAC CGGCAGCACA ACACGGCGAA GGCGTGGTTC TCTTGGTGGA GGACGAAGCT
CCGGTTCGGG CCTTTGCATC GCGCGCGCTG CGCATGCGCG GCTATACGGT CCTTGAGGCC
GAATCCGCTG AAGAGGCGCT CGACACGCTC GAAGATCCAA ACCTCAGCGT TGATGTCTTT
GTGACCGATG TCATCATGCC CGGGATGGAT GGGCCGACTT GGGTGCGGGA AGCCCTCAAA
ACCCGGCCCG GCACCAAGGT GGTCTTTGTG TCCGGGTACT CCGAAGGGGC CTTTGGCGAT
GCGGAGCCCG ACGTGCCGAA TTCGGTCTTC CTGGCCAAAC CGTTCTCGCT CTCGCAGCTC
ACGGAAACCG TTCAGTCTCA ACTTCAGTAA
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| Protein sequence | MIGRSSSIAP SLKIQTPEQA RLAATFLLSA LLIVLPWLLP VPEWIGRALV AVGLTLGGVS
AMILIQTRVR MGARTMASEL LTGFIDKDAS ASFVTDEDGV IHACNTAALK RFEGSESDTI
SGTLRSVLAN PSAVLFRLQS RAKLEGSARE DIVTRRGNVR IAVHEMANGS FLWRVEDMGE
RPSGRTADAS PVPMISVGRT GAVLFMNESA RSLIGERVKS TDRLFTSLPV IPGRINTIMT
KSGPVEVLVS EHARGQGRSE IYFMKAVVED SGPHTGFESL PVPLLKVRAG GEVMAVNRMA
MRLLGIEEAE GVQLGQLMEG LGRPMNDWLQ ETSKGLAPHK SEFLRVSRDD KEVFVQVTLT
RIIEDGETLL LAVLNDATEL KTLEAQFVQS QKMQAIGQLA GGVAHDFNNL LTAISGHCDL
LLLRHDQGDQ DYGDLIQIHE NANRAAALVS QLLAFSRKQT LQPEVLDVRE TLSDLTHLLN
RLVGEKVSLT LSHDPVMRSI RADKRQLEQV LMNLVVNARD AMPHGGEIRV ETEVVALDTA
LERDRALVPP GEWVTIQVSD EGTGISPDKL QKVFEPFYTT KRTGEGTGLG LSTAYGIIKQ
TGGFIFVDSV LNQGTKFTLY FPVYRSDASH DVEEAVAPAK TKAPAAQHGE GVVLLVEDEA
PVRAFASRAL RMRGYTVLEA ESAEEALDTL EDPNLSVDVF VTDVIMPGMD GPTWVREALK
TRPGTKVVFV SGYSEGAFGD AEPDVPNSVF LAKPFSLSQL TETVQSQLQ
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