| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1218 |
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| Symbol | |
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| ID | 4075926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1308297 |
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| End bp | 1309919 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006526 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_613213 |
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| Protein GI | 99081059 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.135115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCTGG CTCGCGCCCC GAAATTTGCT TCGTTCGTCA CTGGTGGAAT TCTTGCCGCC
GTTCTGGGGA CGACCCTGCT TTTTGCTGAA AAGGCCGAGG CGGCGAGCAC CGGGTTTCGC
CAAGCGGTTG CCGAGATGGC GTGGGAGGAC GAGGCGGTCT CCAGCTATTA CCGTCAAAAC
CAATACGCCC CCCTTTGGAC CGCAGACACA CCAGAGGCGA CGGCGCGGCG CCGTGCCCTG
ATGCAGGCGC TCGAAGAGGC CTCCATGCAT GGGCTGCCTG ATATGTCGGC GCGGGCGGCG
GACCTCGTTG AACAGATGCG CAACGTCCGT TCCACCCGCG ATCTTGGCGC GGTCGAGGTT
GCTCTGAGCC GGGCCCTGGT GGACTACGCA ACGGACTTGC AGACCGGTCT GATCGACACG
CCCGTCCGCA TTGACGAAGG CATCGTGCGG GAAAAGCACA AGGTGGATGC GACGCGTTTC
CTCGAGGGGA TTGCGACCGA TCGCCCGGCA GCCTTCCTGC AGGATCTTGT TCCGACCTCC
TCTCAATATC GTGCTCTGCT GCGCGAGAAG ATGCGGCTTG AGGCGCTGCT GCAGGCTGGC
GGCTGGGGCG CAACCGTTCC CGTGCGCAAG ATCGAGCCGG GCGACACGGG CCAGAGCGTG
CTTGCCCTGC GCAACAGGCT GGTGTCGATG GGCTACCTGG CGCCCACGGC GACACGCAGC
TATGACCTTG ATGTTGAGGA CGCCGTACGC CGGTTCCAGT CTGAACATGG CCTCGAGGTC
GATGGCGTCG CAGGCGAGGG CACACTCAAG GAGCTGAACC GCCCGGTTTC GGATCGGATC
AAGTCGGTTC TGGTCGCCAT GGAGCGCGAA CGCTGGCTCA CCCCTGAGCG CGGCCTGCGT
CATATCCTTG TGAATCTCAC GGATTTCTCG GCCAAGATCA TGGATGAGGG TGAAATCTCC
TTTGAGACGC GCTCTGTGAT CGGCAGCACC AAAAGCGACC GCCGCACGCC AGAGTTCTCG
GACGAGATGG ATCATATGGT GATCAACCCG AGCTGGTATG TCCCGCGCTC GATCATCACC
AAGGAATATC TGCCCAAACT CAAGAATAAC CCCAACGCCC ACAGCTACAT CGAGATCACC
GATAATCGGG GTCGGGTGGT CAATCGAAAC AACGTGGACT TTAGCCAGTT CACCGCGCGC
AGCTTTCCGT TTGCCATGCG CCAGCCTCCG AGCAGCCGAA ATGCGCTTGG TCTGGTCAAG
TTCATGTTCC CGAACAAATA CAACATCTAC CTGCATGACA CCCCGCAAAA GCATCTCTTT
GGCCGCGAGG TGCGCGCCTT TTCGCATGGC TGCGTCCGTC TGCATCAACC CTTTGAATTT
GCGTATGAAC TCTTGACGCC TCAGACGGAG AACCCAAAGG ACTACTTCCA CCGGGTGCTG
AACAGCGGCA AGGAAACCAA AGTGCCGCTG GAAACCAAGG TGCCGGTGCA TCTGATCTAT
CGCACCGCCT TTGTGTCGCA GGATGGCCGC GCCGAATTCC GCCGCGATGT CTACGGACGT
GACGCAAAGA TCTGGTCCGC TTTGGAGCGG GCAGGGGTGG CACTTCCCGG CGTTCAAGGC
TAA
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| Protein sequence | MPLARAPKFA SFVTGGILAA VLGTTLLFAE KAEAASTGFR QAVAEMAWED EAVSSYYRQN
QYAPLWTADT PEATARRRAL MQALEEASMH GLPDMSARAA DLVEQMRNVR STRDLGAVEV
ALSRALVDYA TDLQTGLIDT PVRIDEGIVR EKHKVDATRF LEGIATDRPA AFLQDLVPTS
SQYRALLREK MRLEALLQAG GWGATVPVRK IEPGDTGQSV LALRNRLVSM GYLAPTATRS
YDLDVEDAVR RFQSEHGLEV DGVAGEGTLK ELNRPVSDRI KSVLVAMERE RWLTPERGLR
HILVNLTDFS AKIMDEGEIS FETRSVIGST KSDRRTPEFS DEMDHMVINP SWYVPRSIIT
KEYLPKLKNN PNAHSYIEIT DNRGRVVNRN NVDFSQFTAR SFPFAMRQPP SSRNALGLVK
FMFPNKYNIY LHDTPQKHLF GREVRAFSHG CVRLHQPFEF AYELLTPQTE NPKDYFHRVL
NSGKETKVPL ETKVPVHLIY RTAFVSQDGR AEFRRDVYGR DAKIWSALER AGVALPGVQG
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