| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1216 |
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| Symbol | |
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| ID | 4075924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1304451 |
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| End bp | 1306760 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638006523 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_613211 |
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| Protein GI | 99081057 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.328064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCAGCT CCGCCAGAAA GTCGATCAGC GCAAAGGTGC GCAAAATTGC CGTGATCGTG
GCCGTTGCAG CGGTGACGTC CCTCACCTTG GCCAGCGCCT TGGTCACCCG AAACCTTGAA
TTGCAGCATG CCAACATTCT AACACGGGAA ACGGCCGACA AAATCAGCCG CGCGAGTGCG
GATGCCACCG CGGCCATCAT TACCGACGCC GAAATCCTTG CGAATATGCC CCCGGTCGCT
GCATTGATCA GGGCGCATTA CAATAATGGG ATCGATCCAG TGAGTGGCGA TACCACCGAG
GAATGGAAAG AACGGCTGAC AACGATTTTC TCCTCGTTTC ACGCGCTTCG CCCGAATTAC
CTGCAAATCC GCTTTGTCGG CTTTGCGGAC AACGCTCAGG AGATCCTGCG TGTTGACAAA
GTCGGGGAAC GGATAGAGCG GGTTCCTGAT CACCGGCTCC AGCAAAAGGG AAACGAACCC
TATGTCGAGG CTGCGAGGAC GGTTCCCATC GGTCAGGCAG TACCGCTGCC TCCCTCCTAC
AACCGCGAAA ATGGCATCAT CCAGGAACCC AAAACCCTGA TGTATCGGGT GCTTGTGCCC
GTGTTGGAAC CGGCAGGCTA CAAATTCGAG GGTCATAGAT TTGGCTTTAT CGTTATCAAC
GTCGACCTGT TGAAACATAA CCAAGCCGCG TACAAGCCGC TCAATCTGGC ATCAAGTTTC
GTCATACACA ACTCCAAGGG GAGCAGCTAC GTCTGGGATG CAGAGGCGCA ATCGGGACAG
TATCACGGCG GCATGGTCGT TGGATTGCCA GAAATCGTGC GCACCGACCT ATCCCGGGCC
AATGCAGAGC AGCCGCTCCG GCTCGTGAAC GAGGGCGCGG AATACATCAC CCTCAAGCTC
GAGAGCGTGA GCTCAGCCAC ACACAGCGTA TTTCTCACAC TGATCAAGGA GCGGCATTTC
TTTTCCAATA TACTGCCGTT CAGCACACTC AATCTCATCG TCTTGGGGCT TTTGCTCATT
TTCTGCAGCT ACGCCTTTGC GAGACGCGGC ATTGAAACGG CACTGGCGCC AATGCAAACC
ATGCGCGGCA ATATTCTCGC ATCGGCAGAA ACCGGGCAGG ATCCCGTTCT CCCCATCCAT
CTTGAGGATG AGGTCGGCGA TCTCGCGCAA TCCTTCAAAG GTCTGATCAC CCGCCTGCGC
AGCCAGGAAT CCGACGCTCG CCAAGTCTTT GACGGCACCA CCGATGGCAT GGTTCTGGTC
ACCTCCAATG GCCTGATACA GCAGTCCAAC GCGGCCTTTG GTGCATTGTT TGGCCCGGTC
GTCATGGGGG AGAGCACCCT AACGGACTAC TTCGCCTCAG GGGACGCCCA GGCGATTGAG
GCCAAAGTCA AACTTCTGGC CTCCGGCAAC GCCGGAAAAC ATTTTGCGGA GGCCGTATTA
TGCCGCGGCA AAAGAGACGC AAAAGATGGC AGCTCGAACT GGTTCGAAGT CACCCTCGCC
CTGCTCAGGG AGGCCGAGCA AAAACTGGCG CTGGTGGTGA TCCGGGACGT GACGGAACGC
GAGGCGATGT CGAAATCTCA AAAGGACCTG ATCGAGCAGC TCAACCGGTC CAACAAGGAT
CTCGAGGAAT TTGCATATGT GGCCTCGCAT GATCTGAAAG CCCCGCTGAG AGCAGTCTCT
CACGCCGCTA CCTGGCTTGA GGAGGATCTC GAGGAACATC TTACAGAGGA AACCACAGAG
CATCTTCACT ACATGAAATC CCGCATCCTG CGGATGTCTG GCTTGCTGGA CGATCTGCTT
GCGCACTCCA AGATTGGGAC AAGGGATTTT GATCCAAAAT CCAACATCAT GTCCGGTTTG
GATCTGTCGC ATAACATTGC CGATCTTTGC GGCTCCGGCC AGGATACTCA GCTCGAGTTT
TCGCAGGACT TCCTTGCTGC GCAGATGAAC CAGATGCCGT TGCAGGTCGT TTTGCTCAAT
CTGGTGTCCA ATGCCTTCAA GCACAATGAC AAGGCACAGG GCCATGTTCT CGTGGCGCTC
AAGGATCAAG GCGATCACTT CGAGATTTCA GTCAAGGACA ATGGCCCCGG CATTCACCCG
AAATTCCAGG AGGCTATCTT TGGCCTGTTC CGCACCCTGA AATCCAAGGA CGAAGTCGAG
GGCAGCGGGA TGGGTCTCGC CTTTGTCGCC AAGCACCTCG CGGTCCTTGG TCAGTCGATC
AAAGTGATTT CAGAAGGCGA TGGCAACGGT GCGGAGTTCG TTTTCACCTG GCCAAAACCA
AATTTGGAGG AGGTACAAAA TGTTGCATGA
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| Protein sequence | MTSSARKSIS AKVRKIAVIV AVAAVTSLTL ASALVTRNLE LQHANILTRE TADKISRASA
DATAAIITDA EILANMPPVA ALIRAHYNNG IDPVSGDTTE EWKERLTTIF SSFHALRPNY
LQIRFVGFAD NAQEILRVDK VGERIERVPD HRLQQKGNEP YVEAARTVPI GQAVPLPPSY
NRENGIIQEP KTLMYRVLVP VLEPAGYKFE GHRFGFIVIN VDLLKHNQAA YKPLNLASSF
VIHNSKGSSY VWDAEAQSGQ YHGGMVVGLP EIVRTDLSRA NAEQPLRLVN EGAEYITLKL
ESVSSATHSV FLTLIKERHF FSNILPFSTL NLIVLGLLLI FCSYAFARRG IETALAPMQT
MRGNILASAE TGQDPVLPIH LEDEVGDLAQ SFKGLITRLR SQESDARQVF DGTTDGMVLV
TSNGLIQQSN AAFGALFGPV VMGESTLTDY FASGDAQAIE AKVKLLASGN AGKHFAEAVL
CRGKRDAKDG SSNWFEVTLA LLREAEQKLA LVVIRDVTER EAMSKSQKDL IEQLNRSNKD
LEEFAYVASH DLKAPLRAVS HAATWLEEDL EEHLTEETTE HLHYMKSRIL RMSGLLDDLL
AHSKIGTRDF DPKSNIMSGL DLSHNIADLC GSGQDTQLEF SQDFLAAQMN QMPLQVVLLN
LVSNAFKHND KAQGHVLVAL KDQGDHFEIS VKDNGPGIHP KFQEAIFGLF RTLKSKDEVE
GSGMGLAFVA KHLAVLGQSI KVISEGDGNG AEFVFTWPKP NLEEVQNVA
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