Gene TM1040_1180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1180 
Symbol 
ID4077789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1270487 
End bp1271353 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content60% 
IMG OID638006486 
Productribonuclease BN, putative 
Protein accessionYP_613175 
Protein GI99081021 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.012264 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCGA TTGGCCAAGC CGTGATACAG GCTCTCGTGA TTGCGCGCCG CGCGCTCGGG 
CGCTTCAGCC GCAAGAATGC ATGGGTGCTG AGCAGCCATA TCGCCATGTC GATGATGATG
GCACTCTTTC CTTTTGTTCT CTTCACGGTG TCGCTGAGCG GCGCCATCGC CAGCCTGTTT
TCCCATCGCA TCGTTGTGGA TGACGTGGTC AATCTGGTGT TTGGCAGCTG GCCGCAGTCG
GTTGCTGAGC CGATCACCCG CGAGGTCTAT GCCGTGCTCG AGACCTCTGG CACTGGCCTC
ATGACCCTTG GCGGGGTGCT GGCGCTCTAT TTTGCCTCCA ATGGTGTGGA TGCGATCCGT
ATCGCGATGC TCAGAGCCTA CGGTCAGGAA GAAACACGTC CCTTCTGGAA GCACCGCCTG
ATCTCCTTGG GGCTGGTGAT CCTGGGCGGA GCAGGGCTGC TGCTGACAGC AGTGTTTGAA
CTGTTCTTGC CGCTGGGGGC GCGCTTTGTG GGGCGTTTCT TTCCGGATCT CGATTTTCTG
CGAGGCTGGG AGCAGGGCGC CAACGGGCTT GTTGTGGCCG TGATCCCGGT GGCGGCGGTG
TTCCTCTATC ACCTTGTTCT TCTGCCAAAG CGTGAAACCC TGCGCCATGT GCTGCCAGGG
GCGCTCGTGA CGCTCGTGTT GTGGTGGGCG TCTGGTGCCG GGTTTGCGTT CTATGTCTCG
AGTTTTGCAA GCTATTCTGC CACCTATGCG GGGCTTGCGG GGGCGATGGC GGCGCTGATC
TTTCTGTACC TCAATGCAGC GATCCTGATC CTTGGTGCCG AGATCAACGG GGTCCTGCAA
ACCGACCGAC AGGCGCGCGA TGCCTGA
 
Protein sequence
MMAIGQAVIQ ALVIARRALG RFSRKNAWVL SSHIAMSMMM ALFPFVLFTV SLSGAIASLF 
SHRIVVDDVV NLVFGSWPQS VAEPITREVY AVLETSGTGL MTLGGVLALY FASNGVDAIR
IAMLRAYGQE ETRPFWKHRL ISLGLVILGG AGLLLTAVFE LFLPLGARFV GRFFPDLDFL
RGWEQGANGL VVAVIPVAAV FLYHLVLLPK RETLRHVLPG ALVTLVLWWA SGAGFAFYVS
SFASYSATYA GLAGAMAALI FLYLNAAILI LGAEINGVLQ TDRQARDA