Gene TM1040_1171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1171 
Symbol 
ID4075957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1261221 
End bp1262021 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content63% 
IMG OID638006477 
Productenoyl-CoA hydratase 
Protein accessionYP_613166 
Protein GI99081012 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.277406 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.140029 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACGG ATGCAATCCT CCTCAAGCAA TTGAGCGAGA CCGGCGTGCT GCGCCTCACG 
CTGAATGATG TCGCGCGCCG CAATGCACTC TCCGAGGCGA TGCTGGGCAC GCTCGGCGAG
GCCTTAGCCA GCGCGGGTCA GGACCCCGCG GTACGTGTGG TGGTGCTTGC GGCAAATGGC
CCTGCGTTCA GCGCAGGTCA TGACCTAAAG GAGCTGACCC GCGGCCGCGC GGCGCCGGAT
GGCGGCAAGG CCTATTTTGC GCGGATCATG GCGCTTTGCT CGGCCGTCAT GCAGAGCATT
GTGACCTGCC CCAAACCCGT CATCGCCGAA GTCACCGGCG TCGCGACCGC TGCGGGCTGT
CAGCTTGTGG CCAGCTGCGA CCTCGCGATC GCCGCCGAGA GCGCACGCTT CAGCACGCCG
GGTGTTCACA TCGGGCTGTT TTGCTCCACC CCGATGGTTG CCTTGTCCCG CAATGTGGCT
GGCAAACACG CCATGGAAAT GCTGCTGACG GGCGACATGA CCTCTGCGGA GCGCGCCGCC
GAGATCGGTC TTGTCAACCG CGTCACCTCC GAAGACGGCT TGCAGGACGC GGTGCTGGAA
CTGGCGCATA AGATCGCGTC CAAATCCTCC ATGACGCTCG CCACTGGCAA GCAGGCGTTT
TATGCGCAGC GCGAAATGCC CCTGTCGGAC GCCTATGACT ATGCAGCGGA CGTGATGGTC
AAAAACATGT TGGCGCAGGA TGCCGCAGAA GGCATCAATG CCTTTGTCGA AAAACGTTCC
CCGCAATGGC AGGATGCATA A
 
Protein sequence
MQTDAILLKQ LSETGVLRLT LNDVARRNAL SEAMLGTLGE ALASAGQDPA VRVVVLAANG 
PAFSAGHDLK ELTRGRAAPD GGKAYFARIM ALCSAVMQSI VTCPKPVIAE VTGVATAAGC
QLVASCDLAI AAESARFSTP GVHIGLFCST PMVALSRNVA GKHAMEMLLT GDMTSAERAA
EIGLVNRVTS EDGLQDAVLE LAHKIASKSS MTLATGKQAF YAQREMPLSD AYDYAADVMV
KNMLAQDAAE GINAFVEKRS PQWQDA