| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1156 |
|---|
| Symbol | |
|---|
| ID | 4075942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1247435 |
|---|
| End bp | 1248664 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638006461 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_613151 |
|---|
| Protein GI | 99080997 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0229771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATGA CTATGACCGC TCCTGCCCCC GACGACCATA TTGCAAAGCG CAATGTTCTG
ATTCTTGTGC TTGCGCAGGC CTTTTTGGGT GCGCAGATGC CGATGATCTT CATCGTTGGG
GGGCTGGCCG GTCAATCGCT TGCCACCAAC CCCTGTCTTG CGACATTGCC GATCTCGCTC
ATTGTCGCGG GTTCGATGAT CTCGGCCACG CCGATCTCTG CGATCATGCA GCGCTTTGGC
CGGCGCGCTG GTTTTGCGAT CGGGGCCACG GGCGGCGCAC TTGGTGGTCT GATTGGCGGC
TATGGGCTCT ATACCGGGTC GTTTCCGGTG TTTCTCATCG GCAGCGCCCT CACCGGCGTC
TACATGAGCG CGCAGGGCTT CTACCGCTTT GCCGCCGCCG ACACCGCCTC TGACAGTTTC
CGCCCCAAGG CGATTTCCTA TGTCATGGCT GGTGGGCTCT TGTCGGCCAT CATCGGCCCG
CAGCTGGTCA AAGCCACAAG CGACGCCTTC GTCATTCCTT TCCTTGGCAC CTATATGGCG
GTGATTGCGG TCAATGTGCT GGGGGTCGGG CTCTTTGCGT TCCTGCGCAT CCCCCGCCCC
GAAGCCCCGA GCGAGGACGC CCCGATGGGC CGCAGCCGCT GGGAGCTGAT GAAAACACCA
ACCATTGCCG TCGCGGTCAT CTGCGCCATG GTATCCTATG CGCTGATGAA CCTTGTGATG
ACCTCGACAC CGCTTGCAGT TGTAGGCTGC GGCTTTGGTC AGGACGCGGC GGCGGATGTG
GTCACATGGC ACGTTCTGGC CATGTATGTG CCGTCCTTCT TTACCGGGCA TCTGATCGCG
CGCTTCGGGG TGGAGAAAAT CGTTGGCGCG GGGCTTGTGA TCCTCGCCGG CGCCGGTGCG
GTCGCCTTGC AGGGCGTAGA ACTCAGCAAC TTCTTTGTGG CGCTTGTCCT TCTGGGCGTC
GGCTGGAATT TTGGCTTTAT TGGCGCAACC ACAATGCTGG CCGGCGCGCA TGAGGCGCAT
GAGCGCGGCC GTATGCAGGG TCTCAATGAC CTCTTGGTCT TTGGCGGTGT CACCGTGGCA
TCACTGGCCT CGGGAGGCCT GATGAACTGC TCAGGCGGCA ACCCGGTCGA GGGCTGGGCC
GCTGTCAATA TGGCGATGGC GCCCTTCCTG GTTCTCGCGG GGGGCGCACT GATCTGGCTG
GTGCTGAAAC CCAAATCCGC CGCGGCCTGA
|
|---|
| Protein sequence | MAMTMTAPAP DDHIAKRNVL ILVLAQAFLG AQMPMIFIVG GLAGQSLATN PCLATLPISL
IVAGSMISAT PISAIMQRFG RRAGFAIGAT GGALGGLIGG YGLYTGSFPV FLIGSALTGV
YMSAQGFYRF AAADTASDSF RPKAISYVMA GGLLSAIIGP QLVKATSDAF VIPFLGTYMA
VIAVNVLGVG LFAFLRIPRP EAPSEDAPMG RSRWELMKTP TIAVAVICAM VSYALMNLVM
TSTPLAVVGC GFGQDAAADV VTWHVLAMYV PSFFTGHLIA RFGVEKIVGA GLVILAGAGA
VALQGVELSN FFVALVLLGV GWNFGFIGAT TMLAGAHEAH ERGRMQGLND LLVFGGVTVA
SLASGGLMNC SGGNPVEGWA AVNMAMAPFL VLAGGALIWL VLKPKSAAA
|
|---|
| |