Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1154 |
Symbol | |
ID | 4075940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1244983 |
End bp | 1246611 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638006459 |
Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
Protein accession | YP_613149 |
Protein GI | 99080995 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.981726 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0493285 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGGAAC GGCTCTATCT TTATGACACC ACCCTGCGCG ACGGTCAGCA GACCCAAGGG GTGCAATTCT CCACGCTTGA AAAAAAGCAG ATCGCCCAGG CCCTTGACGA CCTAGGTGTG GACTATATCG AAGGCGGCTG GCCGGGGGCC AACCCCACCG ACAGCGCCTT TTTCGATGAG GCGCCCAAGA CCCGCGCGAC GCTCACCGCC TTTGGCATGA CCAAGCGGGC AGGACGTTCG GCGGCAAATG ACGATGTGCT GGCGGCTGTG ATGAACGCAG GCACCCGGTC GGTCTGTCTT GTGGGCAAGT CGCATGATTA TCACGTAACG ACCGCGCTTG GGATCAGCCT TGACGAGAAC CTCGACAACA TCGCGCAGTC GGTGGCGCAT ATCGTGGCCG AGGGGCGCGA GGCGCTGTTT GATGCAGAGC ATTTCTTTGA TGGCTACAAG GCGAACCCGG AGTATGCGCT GGCGGCCTGC CGTGCCGCGC TCGATGCGGG CGCGCGCTGG GTTGTTCTGT GTGATACAAA TGGTGGCACG CTGCCGCATG AGGTGTCTCG GATCGTCACT GAGGTGATTG CTGCGGGGCT GCCGGGCGAG AAGCTCGGCA TTCACACCCA CAATGACACC GAAAACGCGG TGGCCTGTTC GCTGGCAGCG GTGGACGCCG GGGTGCGCCA GATCCAGGGG ACGCTGAATG GGCTGGGGGA GCGCTGCGGC AACGCCAATC TCACCACGCT GATCCCGACG CTGCTGCTGA AGGAGCCCTA CGCGAGCGGC TATGAGACAG GCGTGCCAAA AGGCGCGCTG GCCCGGCTCA CCAAGGTCAG CCGGATGCTT GATGAGATCC TCAACCGGGT GCCGCAGAAG CAGGCCGCCT ATGTGGGGGC CTCGGCCTTT GCCCATAAGG CGGGCCTGCA CGCCAGCGCG ATCCTCAAGG ACCCGTCAAC CTATGAGCAT ATCGACCCGG CTGTGGTCGG CAACGGCCGC ATCATTCCGA TGTCCAATCA GGCCGGGCAG TCGAACCTGC GCCGTCGTCT GGCCGAGGCG GGCCTCACGG TTGAAAAAGG CGACCCTGCG TTGGGCCGTA TTCTGGAGCG GGTGAAGGAA CGCGAGACCG AGGGTTACTC CTATGACACC GCGCAGGCCT CGTTCGAGCT GCTCGCGCGC GAAGAACTGG GCCAGATGCC AGAGTTTTTC GAAGTGAAGC GCTACAAGGT CACCGTGGAG CGGCGCAAGA ACAAGTACAA CAAGATGGTG AGCCTCTCCG AGGCGGTGGT CGTGGTCAAG GTCGACGGTG AAAAGCTGCT CTCGGTGAGT GAATCGCTGG ATCCCTCGGG CAGCGACCGT GGACCGGTGA ACGCGCTCGC AAAGGCGTTG CGCAAGGATT TGGGGCGCTA TTCCAAGGTG TTGGATGATA TGCGTCTGGT CGACTTCAAG GTGCGGATCA CCCAGGGGGG CACCGAGGCC GTGACCCGCG TGATCATCGA CAGCGAGGAC GGCAAGGGGC GGCGCTGGTC CACGGTTGGG GTCAGTGCCA ACATATTGGA TGCCTCGTTC GACGCGCTGC TTGATGCGAT GAACTGGAAG CTTCTGCGGG ATGCATCTGA GGCAGCGGAT GCAGTTTGA
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Protein sequence | MTERLYLYDT TLRDGQQTQG VQFSTLEKKQ IAQALDDLGV DYIEGGWPGA NPTDSAFFDE APKTRATLTA FGMTKRAGRS AANDDVLAAV MNAGTRSVCL VGKSHDYHVT TALGISLDEN LDNIAQSVAH IVAEGREALF DAEHFFDGYK ANPEYALAAC RAALDAGARW VVLCDTNGGT LPHEVSRIVT EVIAAGLPGE KLGIHTHNDT ENAVACSLAA VDAGVRQIQG TLNGLGERCG NANLTTLIPT LLLKEPYASG YETGVPKGAL ARLTKVSRML DEILNRVPQK QAAYVGASAF AHKAGLHASA ILKDPSTYEH IDPAVVGNGR IIPMSNQAGQ SNLRRRLAEA GLTVEKGDPA LGRILERVKE RETEGYSYDT AQASFELLAR EELGQMPEFF EVKRYKVTVE RRKNKYNKMV SLSEAVVVVK VDGEKLLSVS ESLDPSGSDR GPVNALAKAL RKDLGRYSKV LDDMRLVDFK VRITQGGTEA VTRVIIDSED GKGRRWSTVG VSANILDASF DALLDAMNWK LLRDASEAAD AV
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