| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1144 |
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| Symbol | |
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| ID | 4078440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1230946 |
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| End bp | 1232781 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638006448 |
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| Product | putative peptidyl-prolyl cis-trans isomerse D |
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| Protein accession | YP_613139 |
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| Protein GI | 99080985 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.186687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0843243 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGC TTTCAAAGAC CTTCGTTTGG ATCCTCATGG GTCTGTTGTT CGTGGGGCTT
GCGGGCTTTG GTGCGATCAA CGTATCCGGC ACCACCCGCA CGCTGGCCAC CGTGGGTGAT
GCCACCGTCA GCGTTGATGA CTACGCCCGC GCCCTGCAAC AGGAACAACG TGCCATTCAG
GCCCAGTCCG GCCAGTCCAT TCCCCTGTCG CAGCTGATCG CCATGGGCGT GGATCGCGGT
GTGCTCTCGG GGCTTGTGGC TACGGCCGCG CTCGACAATG AGCTCACAGA GATCGGCCTG
TCTGTGGGCG ACGAAGTGCT GCTCGAAGAG ATCACCCGGA TTTCGGCCTT CCAGGGGTCT
GATGGCAGCT TCAGCCGCGA CAACTACCGT TTTGCCCTTG ATAACGCAGG TCTGTCCGAG
GCTGAGTTCG AGGCCGACAT GCGGTCTGAA ACCGCGCGCA CGCTGCTGCA AGGGGCCATC
ACCGGTGGCA CCCGCATGCC CGCGGTGCTG GGCGAGACAC TCACCAACTA TATCGGTGCG
CGTCGCAGCT TTTCCTATGT TCGGCTCGCC GAGGCCAACG TCCCCCTGAC CGCGATCGCG
CCCACCGAGG ATGCGCTCAA GGCTTATTAC GAGACCCACA TCGAGGATTT CACCCTGCCC
GAGACCAAGG TGATCACCTA TGTCGCCCTG CGCCCCGACG CGCTGGTGGA TCAGGTCGAG
GTGGATGAAA CCGCTCTGCG CGGTCTCTAC GAGGAGCGCG ACGCAGAATT CAACGTCCCC
GAGCGCCGCC TTGTCGAACA GCTGGTGTTC CCCGACGAGG ACGCCGCCCA AACCGCCAAG
GCCGAGCTCG ATGTGGGGGG GACCACCTTT GAAACCCTGG TGGCAGATCG CGAACTCTCC
CTGTCGGACA TCGACATGGG TGATGTGGCG ATTGGCGACC TTGGCGCTGC GGGCGAAGCC
GTCTTTGCCG CCGACGTGGG CGCCGTGGTT GGCCCGCTTC CATCAGATTT TGGCCCCGCG
CTCTACCGTG TGAACGGCGT GCTCGAAGCG AATTTCACCA GCTTTGAAGA GGCCCTGCCG
GTCTTGCGCG AAGAGCTGGC TCTGGATCGT GCCCGCCGCC TGATTGAATC CCGCGCCGAA
GGGCTGGATG ATGCGCTCGC CGGTGGCGCG ACGCTCGAAG ATCTCGCCGA GGAAGAAAAC
GGCGTGGTGC TCGGCCAGCT TGACTGGACC GCCAATACCA CTGACGACAT TGCGGCCTAT
GACACCTTCC GCAACGCGGC AGAGGCCGTG ACGACCGAAG ATTTCCCCGA AGTGGGCTAT
CTCGAGGATG GCAGCCTCTT TGCGTTGCGC CTCGATGAGG TCCTGCCCCC GCGCCCCGAG
CCCTTTGAGG ACGCGCGCAC AGCCGTTTCC GAAGCCTACG AGGGCGACCG GATCGCCAAG
GCGCTTGCCG CGCAGGCCGA ACAGATCAAA ACCGCGACCG AGGGCAACAA CGGCCAGTTC
CCCGAAGGTC GCGAAGTGAT CGAGCAGACC GGCCTTACCC GGACCGCCTA TCTCGATCAG
ACCCCGGTTG ATCTCCTCAA TCAGGTGTTC GAAATGGAAG TGGGCGAAGT GCGTGTTGTC
TCCGACGCAG AAGGCACTGT TGTGGTGCGT CTCGACGAGA TCCTGCCCCC GGATGACGGC
AATGACATGC AGTTCCTGTC TCAGGCGCTC GGCGATCAGC TGAACCAGTC GCTCTCCAAC
GAGATCTTCC AGATCTATCT GCAATCGGTT CAGACCCGCG CCCGTCCGCA GGTCAACCAA
CAGGCCGTGA ATGCTGTTCA CGCCAACTTC CAGTAA
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| Protein sequence | MKKLSKTFVW ILMGLLFVGL AGFGAINVSG TTRTLATVGD ATVSVDDYAR ALQQEQRAIQ
AQSGQSIPLS QLIAMGVDRG VLSGLVATAA LDNELTEIGL SVGDEVLLEE ITRISAFQGS
DGSFSRDNYR FALDNAGLSE AEFEADMRSE TARTLLQGAI TGGTRMPAVL GETLTNYIGA
RRSFSYVRLA EANVPLTAIA PTEDALKAYY ETHIEDFTLP ETKVITYVAL RPDALVDQVE
VDETALRGLY EERDAEFNVP ERRLVEQLVF PDEDAAQTAK AELDVGGTTF ETLVADRELS
LSDIDMGDVA IGDLGAAGEA VFAADVGAVV GPLPSDFGPA LYRVNGVLEA NFTSFEEALP
VLREELALDR ARRLIESRAE GLDDALAGGA TLEDLAEEEN GVVLGQLDWT ANTTDDIAAY
DTFRNAAEAV TTEDFPEVGY LEDGSLFALR LDEVLPPRPE PFEDARTAVS EAYEGDRIAK
ALAAQAEQIK TATEGNNGQF PEGREVIEQT GLTRTAYLDQ TPVDLLNQVF EMEVGEVRVV
SDAEGTVVVR LDEILPPDDG NDMQFLSQAL GDQLNQSLSN EIFQIYLQSV QTRARPQVNQ
QAVNAVHANF Q
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