| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1140 |
|---|
| Symbol | trpD |
|---|
| ID | 4078436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1226005 |
|---|
| End bp | 1227027 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638006444 |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_613135 |
|---|
| Protein GI | 99080981 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.493316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATG CGTTGAAACC CCTGATCGGT CTGGCCGCGG ATCGCGCCCT GACCCGAACC
GAAGCCGAAA CCGCCTTTGC CGCGCTGTTC AATGGCGAAG CCACGCCAAG CCAGATGGGC
GGTCTTTTGA TGGCCCTGCG CACCCGCGGC GAGACGGTGG ACGAATATGC CGCCGCCGCC
GCCGTGATGC GTGCAAAATG CAACAAGGTC TCGGCCCCCG CAGATGCGAT GGACATCGTT
GGCACCGGCG GTGATGGCAA AGGCACGCTC AATATCTCGA CCGCAACCGC CTTTGTGGTT
GCCGGTGCAG GCGTGCCCGT CGCCAAACAC GGCAACCGCA ACCTGTCGTC CAAATCCGGC
GCCGCAGATG CGCTCACCGA GATGGGCATT CAGGTCATGG TTGGCCCGAA AGTGGTCGAA
AAGTCCCTCA AAGAGGCGGG CATCTGTTTC ATGATGGCGC CCATGCATCA CCCGGCAATC
GCCCATGTGA TGCCCACCCG TCAGGAGCTT GGCACGCGGA CGATTTTCAA CATCCTCGGC
CCGCTCACCA ACCCCGCAGA TGTCAAACGC CAACTCACCG GTGCCTTCAG CCGTGACCTG
ATCCGACCGA TGGCGGAGAC GCTGAAACAG CTCGGCTCCG AGGTCGCATG GCTGGTGCAT
GGCTCTGACG GGACTGATGA GCTCACGATC ACGGGTGTCA GCTGGGTTGC GGGTCTCTCG
GAGGATGGCA ACATCTCCGA ATTCGAGGTC CACCCCGAAG AGGCAGGCCT GCCGGAGCAT
CCTTTTGAGG CCATCGTCGG TGGCACGCCC GCCGAGAACG CCGCCGCCTT CCGCGCCCTC
CTCGAAGGCA CGCCCTCGGC CTACCGGGAT GCGGTGCTTT TGAACTCTGC CGCAGCACTC
AAGGTGGCCG GCGTGGTGTC GTCGCTCAAG GAGGGCGCGG AACGCGCTGC CGAAAGCATC
GACAGCGGTG CCGCTCTGGG CAAGGTGACG GCGGTTGCAC GGATCACGTC GGAGGCCAGC
TGA
|
|---|
| Protein sequence | MSDALKPLIG LAADRALTRT EAETAFAALF NGEATPSQMG GLLMALRTRG ETVDEYAAAA
AVMRAKCNKV SAPADAMDIV GTGGDGKGTL NISTATAFVV AGAGVPVAKH GNRNLSSKSG
AADALTEMGI QVMVGPKVVE KSLKEAGICF MMAPMHHPAI AHVMPTRQEL GTRTIFNILG
PLTNPADVKR QLTGAFSRDL IRPMAETLKQ LGSEVAWLVH GSDGTDELTI TGVSWVAGLS
EDGNISEFEV HPEEAGLPEH PFEAIVGGTP AENAAAFRAL LEGTPSAYRD AVLLNSAAAL
KVAGVVSSLK EGAERAAESI DSGAALGKVT AVARITSEAS
|
|---|
| |