| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1127 |
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| Symbol | |
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| ID | 4077248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1211514 |
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| End bp | 1213478 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638006431 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_613122 |
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| Protein GI | 99080968 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTACAG AGCTCGGTCA CTTCGCCCTC ATCCTCGCCT TTATGATCGC CATCGTGCAG
ACGGTTGTGC CCCTGATTGG TGCGCATAAA CGCTGGCCCG GCTGGATGGC CGTGGCGGAA
CCCGCAGCGC AGGCCCAGTT CCTGTTTACG GCGTTTTCCT TTGGGGCGCT CACATGGGCC
TTTGTGACCT CGGATTTCTC GCTGCGGCTG GTGACGCTCA ACAGCCACTC CGCCAAACCG
ATGATCTACA AGATCTCGGG CACTTGGGGG AACCATGAGG GCTCCATGCT GCTCTGGGTG
CTGATCGTGA CCCTCTTTGG GGCCTTGGCC TCGGTGTTTG GAGGCGGGCT GCCGCCGACA
CTCAAGGCGC GGGTGCTCAG TGTGCAATCG GCCATTGGCG TGGCCTTTTT CGCGTTCATC
CTCTTTACCT CCAACCCCTT CTTGCGGCTG GAAAACCCTC CCTTTGACGG GCAGGATCTC
AATCCGCTCC TGCAAGATCC GGGCCTCGCG TTCCACCCGC CGTTTCTGTA CTTGGGCTAT
GTGGGGCTCT CGATGGCGTT CTCCTTTGCT GTGGCTGCCC TGATCGAAGG GCGGGTTGAT
GCGGCCTGGG GGCGCTGGGT CCGGCCCTGG ACATTGGCGG CGTGGGTGTT CCTGACCATC
GGCATCGCGC TGGGGTCCTG GTGGGCCTAT TACGAGCTTG GCTGGGGCGG CTTCTGGTTC
TGGGATCCGG TGGAGAATGC GTCCTTCATG CCATGGCTTC TCGCCGCTGC GCTTCTGCAT
TCCGCGATCG TGGTGGAAAA GCGCGAGGCG CTCAAGAGCT GGACCATCCT TCTCGCGATC
CTCGCCTTTG GCTTTTCGCT CATCGGCACC TTCATCGTGC GCTCTGGGCT TTTGACCTCG
GTGCATGCCT TTGCCAATGA TCCAGAGCGT GGCGTGGTGA TCCTTGGAAT TCTCGCCTTC
TTTACCGGCG GCGCGCTGCT GCTCTTTGCC CTGCGCGCGC AGGCTATGGA GGCCAAAGGC
GTGTTCTCCA TGGTCAGCCG GGAGAGCGCG CTGGTGGCCA ACAACCTCTT GCTGGCGGTC
AGCTGCTTTG TGGTTTTTGT TGGCACGCTC TGGCCGGTGG TGGCGGAGAT GGCCTTTGAT
CGCAAGCTCT CGGTCGGGGC ACCGTTCTTT GATGCGGCCT TCCCGCCCTT CATGGTGGCG
CTGGGGCTCT TGCTGCCGAT CGGCTCAATG CTGCCGTGGA AGCGCGGTAA AGGCGCCAAG
ACGCTCTGGA CGCTGCGCTA TGGCATCGTA CTGGCGCTGG CCCTTGCGGG GCTCGCCTGG
GCGATCCAGA CCGAAAAGAG CCTGCTTGGC CCCGTTGGCG TTCTGCTGGG CGCTTGGGTC
GTAAGCGGCG CTGCACTTGA TTTGTTGCAA CGCGCAGGGC GCAAGGACCG GCTCTCGCGC
CTGATGCGGT TGCCGCGTGC CGATTGGGGC AAGGCGGTGG CGCATGCCGG GCTTGGCGTG
ACGATCTTTG CCGTGGCAGG GCTGACGGCC TGGCAAAAAG AAGACATCCG TGTTGCCAAC
CTCAATGAGC CGTTCCGCGT CGGTCCCTTT GAACTGGTGC TGTCTGCGGT CGAAGAGGGG
CGCGGGCCGA ATTACTTCAC CACGATGGGC GTGGTGGATG TGACCCGCAA CGGCAAGGAC
GTCGCAACGC TGCGGCCGGA GAAACGCGTC TATCCGGTGG CGCAGATGCC CACCACGGAG
GCGGCGATTG ATTATCGGTT CACCCGCGAT CTCTATGTGG TGCTGGGCGA TGCGCAAGAG
GGCGGCGGAT TTACTCTGCG CACCTATATC AAGCCCTTCG CCAACTGGAT CTGGGGCGGC
AGCCTGCTGA TGGCCCTTGG CGGCTTCCTG AGCCTCTCGG ACCGTCGGTT CCGGGTTGCG
GCCGGGGTGC GCAAGGCCCC CACCGAGGGG GTGCCCGCGG AATGA
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| Protein sequence | MITELGHFAL ILAFMIAIVQ TVVPLIGAHK RWPGWMAVAE PAAQAQFLFT AFSFGALTWA
FVTSDFSLRL VTLNSHSAKP MIYKISGTWG NHEGSMLLWV LIVTLFGALA SVFGGGLPPT
LKARVLSVQS AIGVAFFAFI LFTSNPFLRL ENPPFDGQDL NPLLQDPGLA FHPPFLYLGY
VGLSMAFSFA VAALIEGRVD AAWGRWVRPW TLAAWVFLTI GIALGSWWAY YELGWGGFWF
WDPVENASFM PWLLAAALLH SAIVVEKREA LKSWTILLAI LAFGFSLIGT FIVRSGLLTS
VHAFANDPER GVVILGILAF FTGGALLLFA LRAQAMEAKG VFSMVSRESA LVANNLLLAV
SCFVVFVGTL WPVVAEMAFD RKLSVGAPFF DAAFPPFMVA LGLLLPIGSM LPWKRGKGAK
TLWTLRYGIV LALALAGLAW AIQTEKSLLG PVGVLLGAWV VSGAALDLLQ RAGRKDRLSR
LMRLPRADWG KAVAHAGLGV TIFAVAGLTA WQKEDIRVAN LNEPFRVGPF ELVLSAVEEG
RGPNYFTTMG VVDVTRNGKD VATLRPEKRV YPVAQMPTTE AAIDYRFTRD LYVVLGDAQE
GGGFTLRTYI KPFANWIWGG SLLMALGGFL SLSDRRFRVA AGVRKAPTEG VPAE
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