Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1104 |
Symbol | |
ID | 4077811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1185278 |
End bp | 1187128 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638006408 |
Product | TPR repeat-containing protein |
Protein accession | YP_613099 |
Protein GI | 99080945 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCGCAGC CCAATCAAAC CCCAAAACTC GCGGTGATGC AGCCCACCAA GAAGCAGTTC CCCGAGTTCG AAAAATTCGC CAATTCCGTC AAGGCGCAGG AACGCGCGAA ATTCGCCTAT GAAATGAAAA ACGGGCTGCG CAGCAGCCGG GCGAAAGGGG AGCAGACCAA GGACACTGTG ACCAAGCTTC TGCGCAAGGC TCAGGCGCTC ATCCTGAAAC ATGAGAACGA AAAGGCCGAG GCGGTGATCA ACCAGGCGAT TGCGCTCGAG GGACAGGATG CGCGGCTCCA TTCGCTGATG GGCGAAGTGC TCATGAAGGA TTCCAACCGG ATGATGGACG CGCTGGGGAG CCTGATGCGA GCCGTCAAGC TGGAGCCGAC CAACGGCAGC CACTACGGCA TGATCGGCAC CCTTCTGATG CGCCTTCAGA AATTTGAAGA GGCGATCGAT TACTTTGAAA TTGCTGTGAA ATTCGATCCC AAAAATCATA TCGCCCTGTC GCGGATGATG CATACCAAAG CCCATCGCGC GCGCTGGGAT GATTTCAACA AGATCCCGAC CTACCTCAAG CAGTTCAAGA ACCAGAACGT GCTGTCCGAT CCTTTTGCCT TCCTGTCGCT TTGCGATGAT GCGGCGTTTC AGAAACAGCG CTCCATCGCC CAGATCAATT CCAAGTTCTG CAACCCCGTC AAAGCCCCCA TCTTCAAGGG GGAGCGCGCG GCCGGCGAAA AGATCCGGAT CGGCTATTTC TCGAACGACT TCTACAACCA CGCCACCATG CATCTCATGG GGGGGCTGCT GGAAAACCAC GACCGATCGA AGTTCGAGAT CTATATCTAC GACTATGGCT CCAAGCTGCG GGACCACGAA CACGAGCGCG CGCGTCGCAG CGCCGATGTG TTTCGCGATA TCCGCACTCT GAACACTGCG CAGATCGTTG ATCTGGCGCA TGGGGATGCT CTGGATATTG CGGTGGATCT CAAGGGCTTT ACCGAGAATG GGCGGCTGGA CATGTTCAAC AGTCGCGTGG CGCCTGTGCA GGTGGCCTAT CTGGGGTATC CGGGCACGAC CGGTTTGAAA TCAATGGATT ACATGGTGGC CGACAAGATC ACGATCCCGT CGCACCTGCG CAAGCACTAT ACCGAAAACA TCCTCTATAT GCCCAATTGC TACCAGCCCA ATGACGAGTC GCGCTTTATC GCCGAGGTTG CAGACACGCG GGCCAGCCAT GATCTCCCCG AAGAGGGGTT TGTGTTCTCC TCCTTCAACA ACCCCTACAA GGTCACGCCG CGCGAGTTCG GCATCTGGAT GGACCTCCTG AAAGAAGTGC CCGACAGCGT GCTGTGGTTC TATGTCTCAA AGGCAGAGAT CATCGACCGT CTGCGCAAGG AAGCCGAGTC GCGCGGTGTC GATGGTGCGC GCATCATCCC CACCGGGCGG ATGCAGCCGG AGTACCACCT GGCGCGCCTG AAACACGCCG ATCTTTTCCT GGATACCTTC AACGTCAACG CACACACGAC CGCCAGTGAT GCACTCTGGG CGGGCTTGCC CGTTGTCACC AAAACCGGCG AGCAATTCGC CGCGCGGGTG GCGGGCAGCA TCCTCAGCGC AGCGGGGCTT GAGGATCTGG TCACTCATAG CGAGAAGAAA TATTACGAAG TGGCTCTGCG CATTGCCCAA GATCCTGACT ATCTTGCGGA TATTCGCAAG CGTCTGGCGG CGTCGCACGA GAACTCGCCG CTGTTTGATA CCAAATCCTA CACCCGCGAT TTTGAACGTC TGATGGAGCG CGCGTTCCAG AATTACATCG ACGGCAACGC CCCGCGCAGT CTCGGAATTT CCGCAGCCTG A
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Protein sequence | MSQPNQTPKL AVMQPTKKQF PEFEKFANSV KAQERAKFAY EMKNGLRSSR AKGEQTKDTV TKLLRKAQAL ILKHENEKAE AVINQAIALE GQDARLHSLM GEVLMKDSNR MMDALGSLMR AVKLEPTNGS HYGMIGTLLM RLQKFEEAID YFEIAVKFDP KNHIALSRMM HTKAHRARWD DFNKIPTYLK QFKNQNVLSD PFAFLSLCDD AAFQKQRSIA QINSKFCNPV KAPIFKGERA AGEKIRIGYF SNDFYNHATM HLMGGLLENH DRSKFEIYIY DYGSKLRDHE HERARRSADV FRDIRTLNTA QIVDLAHGDA LDIAVDLKGF TENGRLDMFN SRVAPVQVAY LGYPGTTGLK SMDYMVADKI TIPSHLRKHY TENILYMPNC YQPNDESRFI AEVADTRASH DLPEEGFVFS SFNNPYKVTP REFGIWMDLL KEVPDSVLWF YVSKAEIIDR LRKEAESRGV DGARIIPTGR MQPEYHLARL KHADLFLDTF NVNAHTTASD ALWAGLPVVT KTGEQFAARV AGSILSAAGL EDLVTHSEKK YYEVALRIAQ DPDYLADIRK RLAASHENSP LFDTKSYTRD FERLMERAFQ NYIDGNAPRS LGISAA
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