| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1083 |
|---|
| Symbol | |
|---|
| ID | 4076316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1157674 |
|---|
| End bp | 1159446 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638006387 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_613078 |
|---|
| Protein GI | 99080924 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATC TCTCGCTGCG CAAACAAATC TTTGGTTTTG CGGGAATCTT TATCGCGATG
ATCCTGATCA TCGCCGCGAT TTCGTGGTTT GCAAACCAAC GCCTTGCCGG GGCCACCTAT
CACTATCGCG CGGTCAGCAC CCAAAGCAAA AGCTTCGACG CCATCAAGGA AGACATCGAA
CAAGGTATCG GCGATCTCTT GTCCTATACC GTCGGCATGC CCGAGGGGCT GAGCGACCTG
CGCGCCAATA TCGAAGAGAT CCGTAGCGAG CTTGCCGTCG CAGAGGATAA TTTCAAATCC
ACCCCCATCA TCGCCGCACG GGACATGCAG GCCTACGACG CGCTGGTCTC GACCGAGCCG
CTTCTGGATC AGCTTGAGGC AACATTGCAG GAGGTAGAGC GCACCGAAGG CGAGGCGCAG
CTGCGCGTGG TCTTTGACAA GGTGTTCCCG CTCGCCGGAC AGGTGCGCGA TGTGGTGGAT
GCGCTTCAGG ACAAACTTGC CGCCACCAGC AAATCCGTCC GCGCAGAGGT CGACTCCCTC
ATTTTGTTCT GCCAGATCAT ACAGATCGCC ACCAGCGTCG CAGCGGCGCT TGTCGCGGTG
ACCGTGGCCT TTGTCTTTGG GCGCAAATTG AGCCAACCAG TGTCTGACGC AGCGCAGAGC
ATCGCGGCGC TGGCAAAGAA GGACTACGTG GCAGAGATTT CCGGCACTCA GCGCGGCGAC
GAACTCGGTC AGATTGCCCG CAATCTCAAG GATTTGCGCA CTCAGCTCGC CGAGGCTGAC
GCGCATGACC GCCAGAACGC CGCCGAAAAC GCGCGCCGGG TCGAGCTATT TGGCGTCCTC
GGTGCCTCCA TGAGCGGTCT CAAGAGCGGC GATCTCGACC AGAACATCGT GGCGCAGGAC
TGGGAAGACC TCGGCCCCGG TTACGCCACG CTCTGCGAGG ATTTCAACGC GCTCTCCTCC
TCGCTTTCGG ATCTGGTGGC CCAGCTCAAT CAAAGCTCCA CCGTCGTGGA ACAAAACGCG
CGCGAAATGG AACGGATGTC GGATCAGATG TCGCAGCGCT CCGAGACCCA GGCCGCCACG
CTGGAAGAAA GCGCTGCCGC GCTGGAAGAA ATGTCGACCG CCGTGCAATC CAGCGCCGCG
CAGGCCAAGG CCGCCGACCG CGAAGTTGAG GAAGGCCGCC GCCGCGCCGA ACAGGGCGGC
GAGGTGATGG CGCAGGCGAG CCGCGCCATG GCCTCGATTG CGGAATATTC CAACCGCATC
TCCCAGATCA TCACCGCGAT CGACGATATC GCCTTTCAGA CCAGTCTGTT GGCGCTCAAC
GCGGGCGTCG AGGCCGCGCG GGCCGGGGAA GCCGGCCGTG GCTTTGCGGT GGTGGCCTCC
GAAGTGCGCG GACTGGCCAT GAAAGCGGCC CATTCTGCAA GTGAAATCAA GCAGTTGGTT
CAGGAAAGCT CCAGCCAGGT CGAAGAGGGA GAGCAGCTGG TACAGGCCAC CGCCGAAACC
CTGACCCAGA TCGTCGAGAG CGTCACCAAT GTCTCTGGCA TGGTCTCCGC CATCGCCAGC
TCCTCCAGCG AGCAGGCTGC CGGCATCCAG GAAATCAACA TCGGCGTGGC GCAGCTCGAC
AAGGCCACGC AGGAAAACGC CGCCATGGTG CAGGAAACCT ATTCCGCCAG CCATGAGATG
CGCACCCAGG CCTCCCGCCT CACCAACCTG CTAGAAGGCT TTACCGGTGG GCAGGCAAGC
TCTAGCACCG CAGCTCCCGC CCGCGCGGCC TGA
|
|---|
| Protein sequence | MTNLSLRKQI FGFAGIFIAM ILIIAAISWF ANQRLAGATY HYRAVSTQSK SFDAIKEDIE
QGIGDLLSYT VGMPEGLSDL RANIEEIRSE LAVAEDNFKS TPIIAARDMQ AYDALVSTEP
LLDQLEATLQ EVERTEGEAQ LRVVFDKVFP LAGQVRDVVD ALQDKLAATS KSVRAEVDSL
ILFCQIIQIA TSVAAALVAV TVAFVFGRKL SQPVSDAAQS IAALAKKDYV AEISGTQRGD
ELGQIARNLK DLRTQLAEAD AHDRQNAAEN ARRVELFGVL GASMSGLKSG DLDQNIVAQD
WEDLGPGYAT LCEDFNALSS SLSDLVAQLN QSSTVVEQNA REMERMSDQM SQRSETQAAT
LEESAAALEE MSTAVQSSAA QAKAADREVE EGRRRAEQGG EVMAQASRAM ASIAEYSNRI
SQIITAIDDI AFQTSLLALN AGVEAARAGE AGRGFAVVAS EVRGLAMKAA HSASEIKQLV
QESSSQVEEG EQLVQATAET LTQIVESVTN VSGMVSAIAS SSSEQAAGIQ EINIGVAQLD
KATQENAAMV QETYSASHEM RTQASRLTNL LEGFTGGQAS SSTAAPARAA
|
|---|
| |