Gene TM1040_1072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1072 
Symbol 
ID4077212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1146071 
End bp1149991 
Gene Length3921 bp 
Protein Length1306 aa 
Translation table11 
GC content66% 
IMG OID638006376 
Producthypothetical protein 
Protein accessionYP_613067 
Protein GI99080913 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0995947 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACAC TGGTTCTGGC AGCGGCAGGC TCCGCCGTGG GTGGGGCAAT CGGCGGCTCT 
GTGGCGGGGC TCTCGACGGC GATCATCGGC CGCGCGGTGG GCGCGAGCCT CGGCCGCGTC
ATTGACGAGC GCCTCCTGGG CAGTGGCAGT GCGGCGGTGG AAACCGGCAA GGTCGACCGA
TTTCGCATCA CCTCCGGCAG CGATGGCGAG CCGATGGCGC AGGTCTTTGG CCGGATGCGT
CTGGGCGGGC AGGTGATCTG GGCGACAGAG TTTGTCGAGA CCGCCACCAC CACCTCCTCT
GGTGGCAAGG GCACCACGCC CTCGCACAGC ACCACCAGCT ATTCCTATAG CCTGTCGATG
GCGGTGGCGA TCTGCGCGGG CGAAATCACA CGCGTGGCGC GGGTCTGGGC CGATGGCGAA
GAGGTCGCAC CGCGCGACCT CAACATGACC GTGTATCGCG GCACGCCGGA TCAGCAGCCC
GACCCCCTGA TGGAGGCGGT AGAGGGCGCG GGTCAGGTGC CGGCCTATCG CGGCACCGCC
TATGTGGTCT TTGAAAACCT CGATCTGGAG CGGTTTGGCA ACCGGGTACC GCAGTTCTCA
TTCGAGGTGC TGCGCGCCGA GCAACCCTCG GGCGCGGCTT ATGAACAGGA TCTGGCGCAG
ATCGTGCCCG GCGTGGCGCT CATTCCCGGC ACGGGCGAGT ACAGCCTGGC CAGCCAGCCG
GTCTATATGC AGCAGGGGCC GGGCGCGCAG ACCGCGGCCA ATATCAACCA GATCTCGGGC
GAGACCGACC TTGTGGCCTC GGTCGAGGCA CTCACTGAGG AGCTGCCGCT GGCCGAGGCG
GTATCCATGG TGGTGTGCTG GTTTGGCGAT GATCTGCGCT GTGGTGACTG CACCCTTGCG
CCCAAGGTGG AGCAAAAACT GGCGGATGGG TCGATGCCGT GGCAGGTGGC GGGGCTCACC
CGGGTCAGCG CGGACGAGGT CATCAACAAC GCAGGCACCG CCGTTTATGG CGGCACGCCG
GCGGATCAGG CGGTGGTGCA GGCCATCCAG CATCTGAACG CCCAAGGCAA GCGGGTGATG
TTTTACCCGT TTATCCTGAT GGAGCAGCAG GCGGGCAATA CCCTCCCTGA TCCCTATAGC
AACGCCGAGA GCCAGCCGGT GTTGCCCTGG CGGGGGCGGA TCACGCTCTC GACCGCACCG
GGACGTTCCG GCAGCCCGGA TGGCACTGCG CTTGCGGATG CCGAGGTCGC GAGCTTTCTC
GGCAGCGCAC AGGCCAACGA TTTTACCATC TCGGGCGGGC AGGTGAGCTA TCACGGCCCC
AATGAGTGGA GCTTTCGCCG ATTTATTCTG CATTACGCTG CCCTTTGTGC GGCGGCGGGC
GGCGTGGAGG CGTTCTGCAT CGGCTCGGAA TTGCGCGGGT TGACGCAGAT CCGGGGCGCG
GGCGGCTTTC CCTTTGTGCA GGGGCTCAAG GATCTGGTGT CTGAGGTACG CGCGCTTTTG
GGACCGGAGG TCAAACTGGG CTATGCGGCG GATTGGTCGG AGTATTTCGG CTATCAGACG
CCGGAGGGCG ACCATCTGTT TCACCTCGAT CCGCTGTGGT CCGACCCGCA GATCGATTTT
ATCGGCATCG ACAATTACAT GCCGCTCAGC GACTGGCGCG AGGGTGAGGA TCACCTCGAC
GCGCAGGAGT GGCCCGCGAT CTATGATCTC GGCTACCTCA AGGCCAATAT CGAGGGCGGC
GAGGGCTATG ACTGGTATTA CCATTCCCCC GAGGCCGAGG CGGCGCAGAT CCGCACGCCG
ATCACGGATG GTGCCTATGA TGAGCCGTGG ATCTATCGCA ACAAGGACAT GCGCAGCTGG
TGGTCGCTGC CGCATCACGA CCGGATTGGG GGCGTGCGGT CCGAGACCGC GACCGATTGG
GTGCCGCAAT CCAAACCGAT CTGGTTCACG GAACTGGGCT GTGCGGCCAT CGACAAGGGC
ACCAATGAGC CGAACAAATT TCTCGACCCG AAAAGCTCTG AATCGCAATT GCCGCGTTCG
TCCAATGGCT TGCGCGATGA TCTGATCCAG CAGCAATATC TGCGAGCGCA GTTCACTTAC
TGGCAGGAGG CGGCGCATAA TCCAACCTCG AGCACCTATG GCGGTGCGAT GGTGGACCTG
AGCCATGCGT ATGTCTGGGC ATGGGATGCG CGTCCCTTTC CCGCCTTTCC CAACCGGGTG
GAGGTCTGGG ACGACGGCGA GAATTACGCG CGCGGGCATT GGCTCAACGG GCGCGCGGGG
CAGCGCACGC TGGCCTCTGT GGTGGAGGAG ATCTGCCGGG AGGCGGGCGT GACGGAAATC
GACGCAAGCC AGCTCTGGGG CATTGTGCGG GGCTATGCGG TCTATGATGT GGCGCAGGCG
CGCAGTGCCT TGCAGCCCCT GATGCTGCGC CACGGCTTTG ACGCCATAGA GCGCGACGGC
AAGCTGATCT TCCGCCTGCG TGACGGGCTG CATGCGCTAA ATCTTGAGCC GGAGGCGCTG
GCAGTGCTGC CAGAGATGGA CGGCGATCAG GAGCAAAGCC GTATGCCTGA GGCAGAGCTG
ATGGGCCGGG TGCGCCTGCG CTTTGTCGAA TGGGGGGGCA GCCATGACAC GGTCGCCGAA
GAAGCGGTGC TGCCGGACGA GGCCACCCAT GCGGTCAGCC AGAATGACCT GCCCATGGCG
CTGACACGTG CTGAGGGGCG GCAGGTGGTG CAACGCTGGC TGGCGGAGGC GCGGATTTCG
CGCGACACCG CACGTTTTGC GCTGCCGCCC TCCATGGCGC TGGAGGTTGC GGCGGGGGAC
GTGGTGCGAC TTCCGGGGCA GGACGGCGAA GGGGCGGCGC GCTACCGGGT GGACCGGGTG
GAGCAGGCCG AGGCGCAGAT CCTCGAGGCC GTGCGCATTG AACCCGTGGT CTACCAGCCG
CTCGCCACGG CGGAGGATCT GCCGCGTGAC ACCGCCTTTG CCGCACCAAC GCCGGTGCTG
CCGCTGTTTC TCGATCTGCC GTTGATGCGC GGGGATGAGG TGGCCCATGC GCCCCACGTC
TGCGCCACGG CCCGCGATTG GCCGGGGGCG GTGGCACTCT ACGGGGCGGA TCTGGGCGGG
GATTTCCAGC TCGAAGACCT CTTGCCCGCC CGTGCGACCG TCGGGATCAC GCAGACCGAT
CTTTTGGCCG GGCCGGTGGG ACGCTGGGAT CGTGGCGCGG ATCTTGAGGT GGAGCTGATT
GCCGGCACGC TCGAAAGCCG CGACGGGCTG TCGGTGCTGG GCGGGGCCAA CCGGCTGGCG
ATTGGCGATG GCAGCCCGGA TACGTGGGAA GTCATCCAAT TTGCAGAGGC CGAGTTGATC
GCGCCCGGGC GCTACCTGAT CCGGGGCCGT CTGCGTGGCC AGTACGGCAG CGACGCGGTG
ATGCCAGAGG TCTGGCCTGC GGGTTCTTAT GTGGTGCTGC TGGACGCTGC CGTCGAACAG
CTGGATCTCG CGCTCTCGGA CCGCCGGATC GCACGGGACT ATCGATTTGG ACCCTCGCGG
CGCGCCTATG ATGATCCCGC TTATGTGGGG CTCTCTGCGG CCTTTGACGG GATCGGCCTG
CGCCCCTATG CGCCGGTGCA TCTGAGGACG GCGCAGACCC TTGGCGCCGA CATGGGGTTT
GACTGGATCC GGCGCACCCG GATCGAGGGC GACAGCTGGG ACCTCGAGGA GGTGCCGCTT
GGCGAGGAGA CAGAGGCTTA TCGCGTGCGG GTGCGCTCTG GTGCAACGAT TTTGCGCGAC
GTGCGTGTCA CCGTGCCCGC ATGGACCTAT TCTGCGGCAG AGCAGGCCAG TGACGGCGTG
CAGGCCGGGG ATGTGGTGGA GGTGGCGCAG ATCTCGGCCC GGTTTGGCGC CGGGGCGGTG
GCGCAGTGGG CGCTGGCATG A
 
Protein sequence
MATLVLAAAG SAVGGAIGGS VAGLSTAIIG RAVGASLGRV IDERLLGSGS AAVETGKVDR 
FRITSGSDGE PMAQVFGRMR LGGQVIWATE FVETATTTSS GGKGTTPSHS TTSYSYSLSM
AVAICAGEIT RVARVWADGE EVAPRDLNMT VYRGTPDQQP DPLMEAVEGA GQVPAYRGTA
YVVFENLDLE RFGNRVPQFS FEVLRAEQPS GAAYEQDLAQ IVPGVALIPG TGEYSLASQP
VYMQQGPGAQ TAANINQISG ETDLVASVEA LTEELPLAEA VSMVVCWFGD DLRCGDCTLA
PKVEQKLADG SMPWQVAGLT RVSADEVINN AGTAVYGGTP ADQAVVQAIQ HLNAQGKRVM
FYPFILMEQQ AGNTLPDPYS NAESQPVLPW RGRITLSTAP GRSGSPDGTA LADAEVASFL
GSAQANDFTI SGGQVSYHGP NEWSFRRFIL HYAALCAAAG GVEAFCIGSE LRGLTQIRGA
GGFPFVQGLK DLVSEVRALL GPEVKLGYAA DWSEYFGYQT PEGDHLFHLD PLWSDPQIDF
IGIDNYMPLS DWREGEDHLD AQEWPAIYDL GYLKANIEGG EGYDWYYHSP EAEAAQIRTP
ITDGAYDEPW IYRNKDMRSW WSLPHHDRIG GVRSETATDW VPQSKPIWFT ELGCAAIDKG
TNEPNKFLDP KSSESQLPRS SNGLRDDLIQ QQYLRAQFTY WQEAAHNPTS STYGGAMVDL
SHAYVWAWDA RPFPAFPNRV EVWDDGENYA RGHWLNGRAG QRTLASVVEE ICREAGVTEI
DASQLWGIVR GYAVYDVAQA RSALQPLMLR HGFDAIERDG KLIFRLRDGL HALNLEPEAL
AVLPEMDGDQ EQSRMPEAEL MGRVRLRFVE WGGSHDTVAE EAVLPDEATH AVSQNDLPMA
LTRAEGRQVV QRWLAEARIS RDTARFALPP SMALEVAAGD VVRLPGQDGE GAARYRVDRV
EQAEAQILEA VRIEPVVYQP LATAEDLPRD TAFAAPTPVL PLFLDLPLMR GDEVAHAPHV
CATARDWPGA VALYGADLGG DFQLEDLLPA RATVGITQTD LLAGPVGRWD RGADLEVELI
AGTLESRDGL SVLGGANRLA IGDGSPDTWE VIQFAEAELI APGRYLIRGR LRGQYGSDAV
MPEVWPAGSY VVLLDAAVEQ LDLALSDRRI ARDYRFGPSR RAYDDPAYVG LSAAFDGIGL
RPYAPVHLRT AQTLGADMGF DWIRRTRIEG DSWDLEEVPL GEETEAYRVR VRSGATILRD
VRVTVPAWTY SAAEQASDGV QAGDVVEVAQ ISARFGAGAV AQWALA