Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1072 |
Symbol | |
ID | 4077212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1146071 |
End bp | 1149991 |
Gene Length | 3921 bp |
Protein Length | 1306 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638006376 |
Product | hypothetical protein |
Protein accession | YP_613067 |
Protein GI | 99080913 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0995947 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGACAC TGGTTCTGGC AGCGGCAGGC TCCGCCGTGG GTGGGGCAAT CGGCGGCTCT GTGGCGGGGC TCTCGACGGC GATCATCGGC CGCGCGGTGG GCGCGAGCCT CGGCCGCGTC ATTGACGAGC GCCTCCTGGG CAGTGGCAGT GCGGCGGTGG AAACCGGCAA GGTCGACCGA TTTCGCATCA CCTCCGGCAG CGATGGCGAG CCGATGGCGC AGGTCTTTGG CCGGATGCGT CTGGGCGGGC AGGTGATCTG GGCGACAGAG TTTGTCGAGA CCGCCACCAC CACCTCCTCT GGTGGCAAGG GCACCACGCC CTCGCACAGC ACCACCAGCT ATTCCTATAG CCTGTCGATG GCGGTGGCGA TCTGCGCGGG CGAAATCACA CGCGTGGCGC GGGTCTGGGC CGATGGCGAA GAGGTCGCAC CGCGCGACCT CAACATGACC GTGTATCGCG GCACGCCGGA TCAGCAGCCC GACCCCCTGA TGGAGGCGGT AGAGGGCGCG GGTCAGGTGC CGGCCTATCG CGGCACCGCC TATGTGGTCT TTGAAAACCT CGATCTGGAG CGGTTTGGCA ACCGGGTACC GCAGTTCTCA TTCGAGGTGC TGCGCGCCGA GCAACCCTCG GGCGCGGCTT ATGAACAGGA TCTGGCGCAG ATCGTGCCCG GCGTGGCGCT CATTCCCGGC ACGGGCGAGT ACAGCCTGGC CAGCCAGCCG GTCTATATGC AGCAGGGGCC GGGCGCGCAG ACCGCGGCCA ATATCAACCA GATCTCGGGC GAGACCGACC TTGTGGCCTC GGTCGAGGCA CTCACTGAGG AGCTGCCGCT GGCCGAGGCG GTATCCATGG TGGTGTGCTG GTTTGGCGAT GATCTGCGCT GTGGTGACTG CACCCTTGCG CCCAAGGTGG AGCAAAAACT GGCGGATGGG TCGATGCCGT GGCAGGTGGC GGGGCTCACC CGGGTCAGCG CGGACGAGGT CATCAACAAC GCAGGCACCG CCGTTTATGG CGGCACGCCG GCGGATCAGG CGGTGGTGCA GGCCATCCAG CATCTGAACG CCCAAGGCAA GCGGGTGATG TTTTACCCGT TTATCCTGAT GGAGCAGCAG GCGGGCAATA CCCTCCCTGA TCCCTATAGC AACGCCGAGA GCCAGCCGGT GTTGCCCTGG CGGGGGCGGA TCACGCTCTC GACCGCACCG GGACGTTCCG GCAGCCCGGA TGGCACTGCG CTTGCGGATG CCGAGGTCGC GAGCTTTCTC GGCAGCGCAC AGGCCAACGA TTTTACCATC TCGGGCGGGC AGGTGAGCTA TCACGGCCCC AATGAGTGGA GCTTTCGCCG ATTTATTCTG CATTACGCTG CCCTTTGTGC GGCGGCGGGC GGCGTGGAGG CGTTCTGCAT CGGCTCGGAA TTGCGCGGGT TGACGCAGAT CCGGGGCGCG GGCGGCTTTC CCTTTGTGCA GGGGCTCAAG GATCTGGTGT CTGAGGTACG CGCGCTTTTG GGACCGGAGG TCAAACTGGG CTATGCGGCG GATTGGTCGG AGTATTTCGG CTATCAGACG CCGGAGGGCG ACCATCTGTT TCACCTCGAT CCGCTGTGGT CCGACCCGCA GATCGATTTT ATCGGCATCG ACAATTACAT GCCGCTCAGC GACTGGCGCG AGGGTGAGGA TCACCTCGAC GCGCAGGAGT GGCCCGCGAT CTATGATCTC GGCTACCTCA AGGCCAATAT CGAGGGCGGC GAGGGCTATG ACTGGTATTA CCATTCCCCC GAGGCCGAGG CGGCGCAGAT CCGCACGCCG ATCACGGATG GTGCCTATGA TGAGCCGTGG ATCTATCGCA ACAAGGACAT GCGCAGCTGG TGGTCGCTGC CGCATCACGA CCGGATTGGG GGCGTGCGGT CCGAGACCGC GACCGATTGG GTGCCGCAAT CCAAACCGAT CTGGTTCACG GAACTGGGCT GTGCGGCCAT CGACAAGGGC ACCAATGAGC CGAACAAATT TCTCGACCCG AAAAGCTCTG AATCGCAATT GCCGCGTTCG TCCAATGGCT TGCGCGATGA TCTGATCCAG CAGCAATATC TGCGAGCGCA GTTCACTTAC TGGCAGGAGG CGGCGCATAA TCCAACCTCG AGCACCTATG GCGGTGCGAT GGTGGACCTG AGCCATGCGT ATGTCTGGGC ATGGGATGCG CGTCCCTTTC CCGCCTTTCC CAACCGGGTG GAGGTCTGGG ACGACGGCGA GAATTACGCG CGCGGGCATT GGCTCAACGG GCGCGCGGGG CAGCGCACGC TGGCCTCTGT GGTGGAGGAG ATCTGCCGGG AGGCGGGCGT GACGGAAATC GACGCAAGCC AGCTCTGGGG CATTGTGCGG GGCTATGCGG TCTATGATGT GGCGCAGGCG CGCAGTGCCT TGCAGCCCCT GATGCTGCGC CACGGCTTTG ACGCCATAGA GCGCGACGGC AAGCTGATCT TCCGCCTGCG TGACGGGCTG CATGCGCTAA ATCTTGAGCC GGAGGCGCTG GCAGTGCTGC CAGAGATGGA CGGCGATCAG GAGCAAAGCC GTATGCCTGA GGCAGAGCTG ATGGGCCGGG TGCGCCTGCG CTTTGTCGAA TGGGGGGGCA GCCATGACAC GGTCGCCGAA GAAGCGGTGC TGCCGGACGA GGCCACCCAT GCGGTCAGCC AGAATGACCT GCCCATGGCG CTGACACGTG CTGAGGGGCG GCAGGTGGTG CAACGCTGGC TGGCGGAGGC GCGGATTTCG CGCGACACCG CACGTTTTGC GCTGCCGCCC TCCATGGCGC TGGAGGTTGC GGCGGGGGAC GTGGTGCGAC TTCCGGGGCA GGACGGCGAA GGGGCGGCGC GCTACCGGGT GGACCGGGTG GAGCAGGCCG AGGCGCAGAT CCTCGAGGCC GTGCGCATTG AACCCGTGGT CTACCAGCCG CTCGCCACGG CGGAGGATCT GCCGCGTGAC ACCGCCTTTG CCGCACCAAC GCCGGTGCTG CCGCTGTTTC TCGATCTGCC GTTGATGCGC GGGGATGAGG TGGCCCATGC GCCCCACGTC TGCGCCACGG CCCGCGATTG GCCGGGGGCG GTGGCACTCT ACGGGGCGGA TCTGGGCGGG GATTTCCAGC TCGAAGACCT CTTGCCCGCC CGTGCGACCG TCGGGATCAC GCAGACCGAT CTTTTGGCCG GGCCGGTGGG ACGCTGGGAT CGTGGCGCGG ATCTTGAGGT GGAGCTGATT GCCGGCACGC TCGAAAGCCG CGACGGGCTG TCGGTGCTGG GCGGGGCCAA CCGGCTGGCG ATTGGCGATG GCAGCCCGGA TACGTGGGAA GTCATCCAAT TTGCAGAGGC CGAGTTGATC GCGCCCGGGC GCTACCTGAT CCGGGGCCGT CTGCGTGGCC AGTACGGCAG CGACGCGGTG ATGCCAGAGG TCTGGCCTGC GGGTTCTTAT GTGGTGCTGC TGGACGCTGC CGTCGAACAG CTGGATCTCG CGCTCTCGGA CCGCCGGATC GCACGGGACT ATCGATTTGG ACCCTCGCGG CGCGCCTATG ATGATCCCGC TTATGTGGGG CTCTCTGCGG CCTTTGACGG GATCGGCCTG CGCCCCTATG CGCCGGTGCA TCTGAGGACG GCGCAGACCC TTGGCGCCGA CATGGGGTTT GACTGGATCC GGCGCACCCG GATCGAGGGC GACAGCTGGG ACCTCGAGGA GGTGCCGCTT GGCGAGGAGA CAGAGGCTTA TCGCGTGCGG GTGCGCTCTG GTGCAACGAT TTTGCGCGAC GTGCGTGTCA CCGTGCCCGC ATGGACCTAT TCTGCGGCAG AGCAGGCCAG TGACGGCGTG CAGGCCGGGG ATGTGGTGGA GGTGGCGCAG ATCTCGGCCC GGTTTGGCGC CGGGGCGGTG GCGCAGTGGG CGCTGGCATG A
|
Protein sequence | MATLVLAAAG SAVGGAIGGS VAGLSTAIIG RAVGASLGRV IDERLLGSGS AAVETGKVDR FRITSGSDGE PMAQVFGRMR LGGQVIWATE FVETATTTSS GGKGTTPSHS TTSYSYSLSM AVAICAGEIT RVARVWADGE EVAPRDLNMT VYRGTPDQQP DPLMEAVEGA GQVPAYRGTA YVVFENLDLE RFGNRVPQFS FEVLRAEQPS GAAYEQDLAQ IVPGVALIPG TGEYSLASQP VYMQQGPGAQ TAANINQISG ETDLVASVEA LTEELPLAEA VSMVVCWFGD DLRCGDCTLA PKVEQKLADG SMPWQVAGLT RVSADEVINN AGTAVYGGTP ADQAVVQAIQ HLNAQGKRVM FYPFILMEQQ AGNTLPDPYS NAESQPVLPW RGRITLSTAP GRSGSPDGTA LADAEVASFL GSAQANDFTI SGGQVSYHGP NEWSFRRFIL HYAALCAAAG GVEAFCIGSE LRGLTQIRGA GGFPFVQGLK DLVSEVRALL GPEVKLGYAA DWSEYFGYQT PEGDHLFHLD PLWSDPQIDF IGIDNYMPLS DWREGEDHLD AQEWPAIYDL GYLKANIEGG EGYDWYYHSP EAEAAQIRTP ITDGAYDEPW IYRNKDMRSW WSLPHHDRIG GVRSETATDW VPQSKPIWFT ELGCAAIDKG TNEPNKFLDP KSSESQLPRS SNGLRDDLIQ QQYLRAQFTY WQEAAHNPTS STYGGAMVDL SHAYVWAWDA RPFPAFPNRV EVWDDGENYA RGHWLNGRAG QRTLASVVEE ICREAGVTEI DASQLWGIVR GYAVYDVAQA RSALQPLMLR HGFDAIERDG KLIFRLRDGL HALNLEPEAL AVLPEMDGDQ EQSRMPEAEL MGRVRLRFVE WGGSHDTVAE EAVLPDEATH AVSQNDLPMA LTRAEGRQVV QRWLAEARIS RDTARFALPP SMALEVAAGD VVRLPGQDGE GAARYRVDRV EQAEAQILEA VRIEPVVYQP LATAEDLPRD TAFAAPTPVL PLFLDLPLMR GDEVAHAPHV CATARDWPGA VALYGADLGG DFQLEDLLPA RATVGITQTD LLAGPVGRWD RGADLEVELI AGTLESRDGL SVLGGANRLA IGDGSPDTWE VIQFAEAELI APGRYLIRGR LRGQYGSDAV MPEVWPAGSY VVLLDAAVEQ LDLALSDRRI ARDYRFGPSR RAYDDPAYVG LSAAFDGIGL RPYAPVHLRT AQTLGADMGF DWIRRTRIEG DSWDLEEVPL GEETEAYRVR VRSGATILRD VRVTVPAWTY SAAEQASDGV QAGDVVEVAQ ISARFGAGAV AQWALA
|
| |