| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1071 |
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| Symbol | |
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| ID | 4077211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1145621 |
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| End bp | 1146058 |
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| Gene Length | 438 bp |
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| Protein Length | 145 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638006375 |
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| Product | putative phage cell wall peptidase, NlpC/P60 |
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| Protein accession | YP_613066 |
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| Protein GI | 99080912 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | [TIGR02219] putative phage cell wall peptidase, NlpC/P60 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0777291 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCGCG ACATCAACAC AGAGGCGGTG GCCCTCGCGC GGCTCTGGCT GGGCACGCCC
TATCGCCATC AGGGGGCCAC GCGGGGGGCG GGCTGCGATT GTCTCGGGCT GATCCGGGGC
CTCTGGCGCA GCCTTTATGG CAGCGAACCC GAACCCGTGC CGCCCTATAC CCGCGACTGG
GCCGAACGCG GCAGCGAGGA ACGCCTGTGG CGGGCAGCAC TGCGGCACAT GCAGCCCGCC
CAAGACCCCA TGCCCGGGCA GGTCATCCTG TTTCGCATGC GCGCAGGGGC GGTGGCCAAA
CATCTTGGCC TCCAGAGCGA GAGCGCGCGC TTTATCCACG CCTACAGCGG CCATGGCGTT
GTCGAAAGCG CGCTGACGCC CGCGTGGCAA CGCCGCATCG TGGCGCGCTT TGCCTTTCCC
GACCCCAACG ATCTCTGA
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| Protein sequence | MSRDINTEAV ALARLWLGTP YRHQGATRGA GCDCLGLIRG LWRSLYGSEP EPVPPYTRDW
AERGSEERLW RAALRHMQPA QDPMPGQVIL FRMRAGAVAK HLGLQSESAR FIHAYSGHGV
VESALTPAWQ RRIVARFAFP DPNDL
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