| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1065 |
|---|
| Symbol | |
|---|
| ID | 4077205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1142485 |
|---|
| End bp | 1142898 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638006369 |
|---|
| Product | Phage major tail protein, TP901-1 |
|---|
| Protein accession | YP_613060 |
|---|
| Protein GI | 99080906 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5437] Predicted secreted protein |
|---|
| TIGRFAM ID | [TIGR02126] phage major tail protein, TP901-1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.134368 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCTC AAAACGGCAA GGATCTCCTG ATCAAGGTGG ATATGACCGG CACCGGAAGT
TTCACCACCA TCGCAGGCCT GCGCGCCACC CGTATCAGTT TCAACGCCGA GAGCGTTGAT
GTGACCAGTC TCGACAGCGC GGGCGGTTGG CGTGAGCTGT TGGGCGGTGC GGGTGTGCGC
TCGGCAAACC TTTCGGGCTC TGGCGTGTTT CGCGATGCGG ATACTGATGA GCGCGCGCGG
CAGCTGTTCT TTGATGGCGA GACACCGGCG TTTCAGGTGG TGATCCCGGA TTTTGGTACA
GTTGAAGGGC CATTTCAGGT CACGGCACTG GAATACGCCG GGAGCCACAA TGGCGAGGCC
ACCTATGAGC TGTCGCTGGC CTCTGCCGGT GCGCTGACCT TTACGGCGGC CTGA
|
|---|
| Protein sequence | MSAQNGKDLL IKVDMTGTGS FTTIAGLRAT RISFNAESVD VTSLDSAGGW RELLGGAGVR
SANLSGSGVF RDADTDERAR QLFFDGETPA FQVVIPDFGT VEGPFQVTAL EYAGSHNGEA
TYELSLASAG ALTFTAA
|
|---|
| |