| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1037 |
|---|
| Symbol | |
|---|
| ID | 4078095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1117856 |
|---|
| End bp | 1118326 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638006341 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_613032 |
|---|
| Protein GI | 99080878 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.166947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCGTC GTCATCTGAT TTTGACCTTG GCGGCTCTTT TCCTCAACTC CGTGGCGGGA
TGCGCGCGCA CCGACAATGA TGTCAGCCGC AGCTTCAACC CTCCGCTTTA TCCAAATGAA
ACGCCGGAGC TGCGGAAAAA GATCAATTAT TGGGCCGATT ACTATGAGGT GCCGCGCAGC
CTCGTGCACC GACTCGCCAT CCGCGAGAGC ACGCACCGCC CCTGGGCCGT CAATCGCCCC
TATTACGGTC TGTTGCAGAT TCTGCCTGCC ACAGCGCGAT CCATGGGGTT TCGGGGCCAG
CCGCAGGAGC TTCTGGATGC GGATACCAAC CTGAAATACG CGGTGCGCTA TCTGCGCGGA
GCGTGGTTGA TTTCCGATGG CAGTCAAGAC AACGCAGTCA AACATTATTC GCGCGGCTAT
TACTACGAAG CCAAGCGCCG TGGCATGCTC AAAGAGACCG GGCTACGCTG A
|
|---|
| Protein sequence | MHRRHLILTL AALFLNSVAG CARTDNDVSR SFNPPLYPNE TPELRKKINY WADYYEVPRS
LVHRLAIRES THRPWAVNRP YYGLLQILPA TARSMGFRGQ PQELLDADTN LKYAVRYLRG
AWLISDGSQD NAVKHYSRGY YYEAKRRGML KETGLR
|
|---|
| |