| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1036 |
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| Symbol | cpdB |
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| ID | 4078548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1115617 |
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| End bp | 1117575 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006340 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_613031 |
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| Protein GI | 99080877 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.222972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTGGC AGATTAATCG TAGATCCTTT CTCGCAGGCA GCGCGGGCCT TATTGCGCTA
CATCCGTTTT CGGTGGCTGC GGCCTCGGGG CAGGTTCACC TGCGCCTGAT GGAAACAACG
GATCTGCACG TCCATGTGTT TCCCTATGAC TATTATGGCG ACAAACCCGT GGACACCCTG
GGCCTCGCCC GCACCGCATC GCTGATCAAC GACATCCGCG CCGAGGCCAC AAACTCGCTC
TTGGTGGACA ATGGGGATTT CCTGCAGGGC AACCCGATGG GCGACTACAT CGCCTATGAG
CGTGGCATGA AAGAAGGCGA CCAGCACCCG GTGATCACCG CGATGAACAC CGTCGGCTTT
GATGCCTCGA CCTTGGGCAA CCACGAATTC AACTACGGGA TTTCCTTTTT GATGAAATCC
CTTGCGGGCG CCGGGTTCCC GGTGGTTTGT GCCAATGTCG CCAAGAAAAC CGGTGCCTCA
CCGCGCGAGG ATGAGACCCT GTTGCCGCCC TATGTGATTC TGGAGCGCGA ACTCACCGAT
GGCGCGGGCA AGGCGCACCC GATCAAGATC GGCCTCATCG GATTTGTGCC GCCGCAGGTG
ATGAACTGGG ACCGCAAACA TCTTGAAGGC AACGTGCAGG CGCGCGACAT CGTCGAATGC
GCCCGTGCCT ATGTGCCGGA GATGAAGGAG AAAGGCGCAG ATATCATCAT CGCGCTCTCG
CATTCCGGCA TCGGCTCGGC CGATCACAGT GACGGCATGG AAAATGCCTC GGTGCCGCTG
GCGGCAGTAG AGGGCATTGA CGCCATCATG ACCGGTCACA GCCATCTGGT GTTCCCCTCC
TCGACCTATG CGGATTTTGC AGGCGTTGAC GCCGACAAAG GCACGATCCA CGGCACGCCC
GCCGTCATGG GCGGCTATTG GGGCAGCCAT ATGGGGCTCA TTGACCTGAT GCTGGAGCGC
GATGGCAATG GCTGGCGCGT TGTGGGCCAT GCCTCCGAGG CGCGCCCGAT TTCCAAGCGC
AACGAGGATC GCAGCGTGAC CGCACTGGTC GAGAGCGATC AGAGCGTGCT GGAGGCGGTG
CAGGCCGATC ACGACGCCAC GCTTGCTTAT GTGCGCCGCG CGGTGGGCAA GACTGATGCA
CCGCTGCACA GCTATTTTGC GCTGGTGGCA GATGACCCTT CGGTGCAGAT CGTGTCGATT
GCACAGACCT GGTATATCTC TCAGATGCTG AAGGGCACCG AGTATGAGGC TCTGCCGATC
CTCTCTGCCG CCGCCCCTTT CAAGGCAGGT GGCCGAGGTG GTCCGGAGTA TTACACCGAT
GTTCCGGTGG GGGATGTGGC AATCAAGAAT GTCGCCGATC TCTACCTCTA TCCCAACACC
GTACGCGCCG TGAAAGTCAC CGGCCAGCAG GTGAAGGACT GGCTTGAGCG CTCGGCGGGC
ATGTTCAACC AGATCGAGCC CGGCAAGGCC GACCAGGTGC TGCTCAACCC GTCGTTCCCC
AGCTACAACT TCGATGTGAT CGACGGCGTG ACCTATCAGA TTGACCTGAG CCAGCCGCCG
ATGTTCGCGC CCAAGGGCGA GCTGATCAAC CCGGATAGCA ACCGGATCGT GAACCTTGAG
TTCAACGGAG CCCCCATTGA TCCCGCGCAG GAGTTCATCA TTGCCACCAA TAACTACCGT
GCCAGCGGCG GTGGCAGCTT CCCCGGTGCG ATGGGTGATA CCATCGTCTT TGAAGGGCCA
GACACCAACC GCGATGTGAT CGTGCGCTAT ATCGTCGAAC AGGGCACCAT CAGCCCTAAG
GCGGATGGCA ACTGGAGCTT TGCCCCGCTG CCGGACACCT CGGTTCTGTT TGACACCGGC
CCCAAAGCCG CCGCCTATGC CGAGAGCGTC CCCGGTGTTA CCATCGCACC TGCAGGGGAT
GGGCCGGACG GGTTTGCCCG CTTCAAGATC ACGCTCTGA
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| Protein sequence | MSWQINRRSF LAGSAGLIAL HPFSVAAASG QVHLRLMETT DLHVHVFPYD YYGDKPVDTL
GLARTASLIN DIRAEATNSL LVDNGDFLQG NPMGDYIAYE RGMKEGDQHP VITAMNTVGF
DASTLGNHEF NYGISFLMKS LAGAGFPVVC ANVAKKTGAS PREDETLLPP YVILERELTD
GAGKAHPIKI GLIGFVPPQV MNWDRKHLEG NVQARDIVEC ARAYVPEMKE KGADIIIALS
HSGIGSADHS DGMENASVPL AAVEGIDAIM TGHSHLVFPS STYADFAGVD ADKGTIHGTP
AVMGGYWGSH MGLIDLMLER DGNGWRVVGH ASEARPISKR NEDRSVTALV ESDQSVLEAV
QADHDATLAY VRRAVGKTDA PLHSYFALVA DDPSVQIVSI AQTWYISQML KGTEYEALPI
LSAAAPFKAG GRGGPEYYTD VPVGDVAIKN VADLYLYPNT VRAVKVTGQQ VKDWLERSAG
MFNQIEPGKA DQVLLNPSFP SYNFDVIDGV TYQIDLSQPP MFAPKGELIN PDSNRIVNLE
FNGAPIDPAQ EFIIATNNYR ASGGGSFPGA MGDTIVFEGP DTNRDVIVRY IVEQGTISPK
ADGNWSFAPL PDTSVLFDTG PKAAAYAESV PGVTIAPAGD GPDGFARFKI TL
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