| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0996 |
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| Symbol | secD |
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| ID | 4078158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1068111 |
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| End bp | 1069775 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006300 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_612991 |
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| Protein GI | 99080837 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAAA TTGATACCTG GAAGAGGGTT CTCATCTGGC TGGTCTGTGT GGCCGGCCTT
TTGGCTGCCC TGCCCAATGC GTTCTACACC CGTGTAGAGC AATCCAATGA CGCCTGGGCC
GCGATCGAGC TTGAAGGCGA AACACCGGAG CGTCTGGATG TGGCCGCGCA ATGGCCCGAG
TGGATGCCTT CGGGGCTGGT AAACCTCGGT CTCGATCTGC GCGGTGGCGC GCATCTTCTG
GCCGAAGTGC AGGTGGGCGA CGTTTATGCC GCCCGCATGG ACGCGCTCTG GCCCGAGGTC
CGCAACACCC TGCGCGATGA GCGCGCAACC ATCGGTACGT TCCGCCGTAT TCCCGACGCC
CCGGCGGATC AGATCCGCCT GCGCCTGTCA GATGAGGCGG GCATGAGCCG CGCGCTTGAA
CTGGTGCGTG GGCTGGCCAA CCCGGTGACA TCGCTCACGG GGGCCGGCGC CACCGACATC
ACGGTGAGCG GCCAGGGCGA TGTCATCACC GTCTCGCTCT CTGAAGAGGA AAAACTCGCC
TCCGATGACC GTACGGTCCG CCAGTCGCTC GAGATTATTC GCCGCCGGAT CGACGAGGTG
GGCACCCGTG AACCCACGAT CCAGCGTCAG GGCAGCGACC GTATTCTCAT TCAGGTGCCA
GGTATCGGCT CTGCAGCGGA GCTGAAGGAA ATCATCGGCA CCACCGCGCA GCTGACCTTC
AACCCGGTTG TGAGCCGAGG CTCTGACGCC GAGGCAAACG CCGGGATCGG CAACAAGGTG
ATCCCCTCGC TGGATGAGCC GGGCACCTAT TACACGGTTG AAACGGCGCC TGTCGTCACC
GGCGAAGAGC TGGTGGACGC GCAGCCCGCA TTTGACCAGA ACGGCCAGCC GGCGGTGAAC
TTCCGCTTCA ATACGGCTGG GGCGCGCAAA TTCGGTGATT ACACCGCTCA GAACATCGGC
GCCCCCTTTG CCATCGTGCT TGATGATGAG GTGATCTCTG CCCCTGTGAT CCGGTCGCAT
ATTCCAGGCG GGTCGGGCAT CATCACCGGG AACTTCACCG TCGAGGAAAG CACACAGCTT
GCGGTGCTTT TGCGCGCCGG TGCCCTGCCT GCAAAGCTCG AGTTTCTCGA AGAGCGCACC
ATCGGCCCGG AACTGGGCCA GGACAGCATC GACGCGGGCA AGGTTGCCAC TGTGGTCGCC
TTTGCCGGGG TGCTGGTTTT CATGATGCTG AGCTATGGGC TCTTTGGGGT CTTTGCCAAT
GTTGCCTTGA TCCTGAACAT CGCGCTGATC TTTGGCGCGC TGAGCCTGAT TGGCGGCACG
CTGACCCTGC CGGGTATCGC CGGGATCGTC TTGACGGTTG GTATGGCGGT CGACGCCAAC
GTGCTGATCT TTGAGCGCAT CCGCGAAGAG CTGAAGGCCG GCCGTGGTCC GGCCCGCGCC
ATCGATGAGG GCTACTCCAA GGCGCTCTCG GCGATTGTGG ACGCCAATAT CACCACGTTC
ATCACCGCCG TGATCCTGTT TGCAATGGGC TCCGGTCCGG TGCGTGGGTT TGCAATCACG
CTTGGCCTCG GCATTCTTAC GTCCGTTTTC ACCGCGATCT TTGTCACCCG ACTGATCATC
GTGATGTGGT TCGAACGTCG CCGTCCAAAA ACCATCGAGG TATAA
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| Protein sequence | MLQIDTWKRV LIWLVCVAGL LAALPNAFYT RVEQSNDAWA AIELEGETPE RLDVAAQWPE
WMPSGLVNLG LDLRGGAHLL AEVQVGDVYA ARMDALWPEV RNTLRDERAT IGTFRRIPDA
PADQIRLRLS DEAGMSRALE LVRGLANPVT SLTGAGATDI TVSGQGDVIT VSLSEEEKLA
SDDRTVRQSL EIIRRRIDEV GTREPTIQRQ GSDRILIQVP GIGSAAELKE IIGTTAQLTF
NPVVSRGSDA EANAGIGNKV IPSLDEPGTY YTVETAPVVT GEELVDAQPA FDQNGQPAVN
FRFNTAGARK FGDYTAQNIG APFAIVLDDE VISAPVIRSH IPGGSGIITG NFTVEESTQL
AVLLRAGALP AKLEFLEERT IGPELGQDSI DAGKVATVVA FAGVLVFMML SYGLFGVFAN
VALILNIALI FGALSLIGGT LTLPGIAGIV LTVGMAVDAN VLIFERIREE LKAGRGPARA
IDEGYSKALS AIVDANITTF ITAVILFAMG SGPVRGFAIT LGLGILTSVF TAIFVTRLII
VMWFERRRPK TIEV
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