| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0988 |
|---|
| Symbol | |
|---|
| ID | 4078150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1058675 |
|---|
| End bp | 1059922 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638006292 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_612983 |
|---|
| Protein GI | 99080829 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCA TCCCTCTTCT GACCGCTGCG GTCGTGACCG CTGGCCTCTA TGCTGTGGTC
ATGGAGCGCG ACAGCCTGTT GGCCTTCGCC CGCGGCGAGG ACGCCCCGTC TGCTGACGCC
ACTGACGCGC AGGCTGAACC GGGCGACGCA TCGACCGATG TGGCGCAATC TGGTCCAAAG
GTCGCAGTTG TTGCCGTGCA CTCCACGGCG CGCGCCATCG ACAATGCGGT GGTTCTGCGT
GGGCAGACCC GGGCCATTCG GCAGGTGAAT GTGCTGGCAG AGACCTCCTC GACCGTGATC
TCTGAGCCGC TGCGCAAGGG GGCCTCTGTG AAGAAGGGCG ATGTTCTCTG TGAACTCGAT
CCGGGCACGC GACCTGCCTC CCTATTGGAG GCGCGCGCCC GCCTCGCGGA GGCCCGTGCC
AATATCCCCG CAGCCGAGGC CCGCCTTGAA GAGGCAAAAG CCGTACTCGA AGAAGCGCGC
ATCAACCTCA CGGCGGCAGA GAAGCTTTCG GAAGGCGGAT TTGCCTCCGA GACACGCCTC
GCCTCAGCCC GCGCCGCCGA GCGCACCGCG CAAGCGGCCA TCGCGACAGC CGAGGGCGGG
CTCACCTCTT CGCATGCGAG CATCGAGTCC GCCTCTGCCG CAGTGGATGC CGCCGAGCAG
GAGATCGAAC GCATCGTGAT CCACGCGCCC TTTGATGGGA TCCTCGAGTC CGACACCGCA
GAGCTCGGAA GCCTGTTGCA GGCTGGAACC CTCTGCGCGA CGGTGATCCA GCTCGATACA
ATCAAGCTGG TTGGCTATGT GCCGGAGACC TCGATCGACC GTGTCGAAAT GGGTGCCGCT
GCAGGCGCAC GGCTGGCAAC CGGCCAACAA GTGACGGGCA CCGTGTCCTT CATCAGCCGC
TCTGCCGATG AAACAACCCG CACCTTCGAG GTTGAGATCA CGGTCGCCAA CCCGGACCTC
AAAATCCGCG ACGGTCAGAC CGCAGAGATC GTGATTGCCG CCGAAGGCAC CAAGGCGCAT
CGTTTGCCGC AATCGGCGCT GACCCTCAAC AACGAAGGCC AGCTTGGTGT GCGCGTGGTG
CGCGACGACA TGACCGCGGG CTTTGTGCCC GTCACCTTGC TGCGCGACGA AGCCAGCGGT
GTCTGGCTCG ATGGGCTACC AGAGGAAGCA AATGTCATCA CCGTGGGACA GGACTTTGTC
ACCGAAGGCG TCGCCCTTGC CCCCACCTAT CAGGAGATGA GTGAATGA
|
|---|
| Protein sequence | MRIIPLLTAA VVTAGLYAVV MERDSLLAFA RGEDAPSADA TDAQAEPGDA STDVAQSGPK
VAVVAVHSTA RAIDNAVVLR GQTRAIRQVN VLAETSSTVI SEPLRKGASV KKGDVLCELD
PGTRPASLLE ARARLAEARA NIPAAEARLE EAKAVLEEAR INLTAAEKLS EGGFASETRL
ASARAAERTA QAAIATAEGG LTSSHASIES ASAAVDAAEQ EIERIVIHAP FDGILESDTA
ELGSLLQAGT LCATVIQLDT IKLVGYVPET SIDRVEMGAA AGARLATGQQ VTGTVSFISR
SADETTRTFE VEITVANPDL KIRDGQTAEI VIAAEGTKAH RLPQSALTLN NEGQLGVRVV
RDDMTAGFVP VTLLRDEASG VWLDGLPEEA NVITVGQDFV TEGVALAPTY QEMSE
|
|---|
| |