Gene TM1040_0983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0983 
Symbol 
ID4078145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1050757 
End bp1051590 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content58% 
IMG OID638006286 
Productshort chain dehydrogenase 
Protein accessionYP_612978 
Protein GI99080824 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.622863 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACAT CGAAACATAA GGTCATCGTC GTGACAGGCG CATCTTCCGG CATCGGGAAA 
ACCGGCGCTC TGCGGCTTAT TTCCGAGGGC TATACCGTCT ATGGCGCGGC CCGCAGTGTC
GACAAGATGC AGGATCTCGT CGTGGCAGGC GGCCATGCGC TGCCTCTTGA TGTCACTGAT
GCAAGCTCGG TGAAACAGGC CGTGGCGCAG GTTCTAAAGG AGCAAGGGCG GATCGATGTG
CTGTGGAACA ACGCTGGCTA TTCTGTTGCG GGCGCTGTCG AGGATGTGCC ACTGTTGGAT
GCCCGTCAGC AGTTTGAGGT GAACCTTTTT GGTGTTGCCG AGATCACAAA GACGGTTCTG
CCCCAGATGC GCAAGCAGCG CTCTGGGCTG ATTATCAATA CGAGTTCCGT CGGTGGCAAA
GTCTTTTCCC CACTCAACGC GTGGTATCAC GCCTCTAAAT TTGCGCTTGA GGGGTGGAGT
GATGCGCTCC GGCTTGAGCT GGCCGCGTTC AACATAGACG TCGTTGTTCT TGAGCCCGGC
GGGATCAAGA CCGACTTCGG CCGCACAATG TATGAGCCGC TCCTCAAAAG AGCCGAAGGC
GGGGCTTATG AGGCATTTAC GCAGAGAATC GCGGCCTCCT ACGAGCGCTA TTACACCGCC
AATGACAGCA CTCTCTCGCC GCCTTCGGTT GTGGGGGAGG CGGTTGCAAA GATCGTTCAG
AGCACACGCC CCCCGACGCG CTATGCGGTC GGGTACATGG CGCGCACCGC TCTTGCGCTG
CGCTGGCTTC TCAGCGACCG CCTATTCTCG CGGATGATAA TGACACAGTT CTAG
 
Protein sequence
MTTSKHKVIV VTGASSGIGK TGALRLISEG YTVYGAARSV DKMQDLVVAG GHALPLDVTD 
ASSVKQAVAQ VLKEQGRIDV LWNNAGYSVA GAVEDVPLLD ARQQFEVNLF GVAEITKTVL
PQMRKQRSGL IINTSSVGGK VFSPLNAWYH ASKFALEGWS DALRLELAAF NIDVVVLEPG
GIKTDFGRTM YEPLLKRAEG GAYEAFTQRI AASYERYYTA NDSTLSPPSV VGEAVAKIVQ
STRPPTRYAV GYMARTALAL RWLLSDRLFS RMIMTQF