Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0983 |
Symbol | |
ID | 4078145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1050757 |
End bp | 1051590 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638006286 |
Product | short chain dehydrogenase |
Protein accession | YP_612978 |
Protein GI | 99080824 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.622863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAACAT CGAAACATAA GGTCATCGTC GTGACAGGCG CATCTTCCGG CATCGGGAAA ACCGGCGCTC TGCGGCTTAT TTCCGAGGGC TATACCGTCT ATGGCGCGGC CCGCAGTGTC GACAAGATGC AGGATCTCGT CGTGGCAGGC GGCCATGCGC TGCCTCTTGA TGTCACTGAT GCAAGCTCGG TGAAACAGGC CGTGGCGCAG GTTCTAAAGG AGCAAGGGCG GATCGATGTG CTGTGGAACA ACGCTGGCTA TTCTGTTGCG GGCGCTGTCG AGGATGTGCC ACTGTTGGAT GCCCGTCAGC AGTTTGAGGT GAACCTTTTT GGTGTTGCCG AGATCACAAA GACGGTTCTG CCCCAGATGC GCAAGCAGCG CTCTGGGCTG ATTATCAATA CGAGTTCCGT CGGTGGCAAA GTCTTTTCCC CACTCAACGC GTGGTATCAC GCCTCTAAAT TTGCGCTTGA GGGGTGGAGT GATGCGCTCC GGCTTGAGCT GGCCGCGTTC AACATAGACG TCGTTGTTCT TGAGCCCGGC GGGATCAAGA CCGACTTCGG CCGCACAATG TATGAGCCGC TCCTCAAAAG AGCCGAAGGC GGGGCTTATG AGGCATTTAC GCAGAGAATC GCGGCCTCCT ACGAGCGCTA TTACACCGCC AATGACAGCA CTCTCTCGCC GCCTTCGGTT GTGGGGGAGG CGGTTGCAAA GATCGTTCAG AGCACACGCC CCCCGACGCG CTATGCGGTC GGGTACATGG CGCGCACCGC TCTTGCGCTG CGCTGGCTTC TCAGCGACCG CCTATTCTCG CGGATGATAA TGACACAGTT CTAG
|
Protein sequence | MTTSKHKVIV VTGASSGIGK TGALRLISEG YTVYGAARSV DKMQDLVVAG GHALPLDVTD ASSVKQAVAQ VLKEQGRIDV LWNNAGYSVA GAVEDVPLLD ARQQFEVNLF GVAEITKTVL PQMRKQRSGL IINTSSVGGK VFSPLNAWYH ASKFALEGWS DALRLELAAF NIDVVVLEPG GIKTDFGRTM YEPLLKRAEG GAYEAFTQRI AASYERYYTA NDSTLSPPSV VGEAVAKIVQ STRPPTRYAV GYMARTALAL RWLLSDRLFS RMIMTQF
|
| |