Gene TM1040_0962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0962 
Symbol 
ID4077258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1027874 
End bp1030345 
Gene Length2472 bp 
Protein Length823 aa 
Translation table11 
GC content60% 
IMG OID638006265 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_612957 
Protein GI99080803 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGACAGA AGATACCGAT TATGCATCGC TGGGTTATTT CCGCAGCCGC CGTGGTTCTT 
ATACTGCTGG CGGCTCAGGC CTATCGTTTG GGAAGCGATG TTCAGTCGCG GATCGAAGCT
CTGTCGAGCG CCGCAACCGA CAACCTTCAG TGGACTTTGT CACAGGCCGA GGTCGACTAT
CTGAAATATC GCTCCGCCGC GATGGTGGTG GAAGATCGCA GCGATCTTCC ACGCCTTCGA
CGCCAGTTCG ATATCTATTA CAGCCGCATC GCGACTTTTC GAGAAAGTGC GCTTTATTCG
GAAGTGCGCG CCACCCCTGA AGGCAGTGAA ACGCTCGGGC GGCTGCAACA GGGGTTGCAG
AGACAAGCGG CACTTATTGA CGCGTCTGAC GATGTTCTGC TCTCCGAGAA AGAGAATTTG
CTGCAGCTGA TTGCCGTCGA TGGCAATGAT GTGCGCGATC TCGCGCTTTT TGGCGTGGCG
CTACAGGCCG AGACGGCGGG CGCGGAGCGG GTTTTGCTGC ACACATTGTT CACCCGTCTT
GCGATTGTGG TTCTGGCGCT TCTTGGGACG CTTGCGCTCA CTGCTCTGGT GATCCTGCGC
CTGTTCCGGC GGGGGCAGCG GCTTTCGATG CTGCAGGCGC AGGAGGCCGC CCGCACAGAG
GCGATGGTCA CATCTTCCCT CGATGCGATC CTAATGGCGG ATGCGGAGGG TCGCATCACC
GCCATCAACG GCGCCGCTGA GGAGATTTTT GGCTACAGCG AAGAGGAGGC GATCGGGATG
AATTTCGACT CGCTGATCCT GCAATCTCCC GAGGGTGCCG GGGCTGGCGA TCTTGACGAT
TTTCTGAACG AGAACGATGG CCGGTTCCAG ATGACCGCCC AGAGGAAGAC CGGCGATGTG
ATCCCGGTCG AAGTCTCATT GACGGTGAGC AAATCTGATG GAAATCAGGT ACTTGTCAGC
TATGTGCGCG ACATTTCCCA TCGCCTGCAA GCCGAGGAAG AACTGCGCCG GGCACGCGAT
GACGCGCTTG CAGGAGAACA GGCCAAAGAT CGCCTTCTGA CGGTGATGAG CCACGAGATG
CGCACGCCGC TCACGGGTAT CCTTGGCTCG CTTGATGTGC TCGAGGGGCT GACGCCGAGC
GCAGAGCAAC AGCGATACCT GCAGGCCATG CGGGTGTCGG GCGAGCTGCT GTTGCATCAC
GTCAATGACG TCTTGCAGCT TTCGCGACTC GAATCCGGCG CCGAGGCGGA CGCGCCCATT
CGCTTTGATC TCGACGAACT TGTGCGTGGC ATCGGGGAGA GCCAGCAGGC CAATGCGGCC
CGCAACAACA ATGACTTAAG TGTATTCTGC AGCCTTGGCG CCGAAACCGG GGTCGAGGGG
CATTGTCGTT ATGTGCAGCA GGTCCTGCTC AATCTCATCG GAAACGCGCT GAAGTTCACC
CAGGATGGCG CTGTTTCGGT GGATGTGATG CGTACCGAAG GCGACCTGGT GGAATTCAGT
GTCGCAGATA CCGGGAAAGG CATCGCAGCC GAGGATCTGG AACGCATCTT CGACGAATTC
ACCATGGTAG ACCCCAATTA CAATCGCGGC TGCGAGGGTA CCGGTCTGGG GCTGGCGATT
TCACGCCGGT TGGCCCGGTT GATGGGGGGA GAGATCACCT GCGAAAGCGA ACCGGGCGAG
GGCAGCCTGT TTAGTTTCAC CATTCCCCTG CCGCCCGTCG CTCTGGAACA GGGCAAGCCG
GTGTTTGCCG CCGATGCTCC AACCCGCCAG CAGCGCCTTC TAGTGATCGA AGATAACGAT
ATCAACCGGT TGCTTCTCGA GACCATGTTG AACGACATGG GACATGAGGT GGTTTCCGTC
AACGGCGGCG CGCGCGCTAT CGAGGAAATT CGCACCCACC GCTTTGATCT GATCATCTCG
GACATCAGCA TGCCGGATAT CGACGGTATG GAAGTCTTGC GCCGCGTCCG TGCAGAGCAA
CTCGCAAATG ATACCGACAT TGTTGCCCTG ACCGCTCATG CCGCGCGTGA CGATCACGAA
CGCATCCTCG CCGCTGGCTT TGCAGAGGTG TTGACCAAGC CCATAGATCG CGCGGCGCTG
GCCGAGATGG TGCTGCGGCG GTCCGCGGCC GATGCTGCGG CGCCCATTCC TGCGCAATAT
CCGGGAGAGT CTGACATTTC TCAATTCGTC GCGGCCGTGG GGCCGGAGAA AGCGCGCCAT
TTTCTCGCAG AGTTTCGCGA TGATGTCCGC GCTTTGCGTG AGGCCCTGAC CCAGAGCGTT
GAATTGACCG ATCAGCACCG TAAGGAAGCT CATCGCCTCG CAGGGTCTGC CGCGGTGCTG
GGGCTTGCGA CGCTGCGCAG CTCGATGCTC GAGATTGAGC AGGCGAATAC CAATGCTTTG
CCCGAGTTGG CACCTCTGCA AGATGCCTGG GGCAACGCTG AAAAAGTCCT CGCGATCCAT
GTGGCATCCT GA
 
Protein sequence
MRQKIPIMHR WVISAAAVVL ILLAAQAYRL GSDVQSRIEA LSSAATDNLQ WTLSQAEVDY 
LKYRSAAMVV EDRSDLPRLR RQFDIYYSRI ATFRESALYS EVRATPEGSE TLGRLQQGLQ
RQAALIDASD DVLLSEKENL LQLIAVDGND VRDLALFGVA LQAETAGAER VLLHTLFTRL
AIVVLALLGT LALTALVILR LFRRGQRLSM LQAQEAARTE AMVTSSLDAI LMADAEGRIT
AINGAAEEIF GYSEEEAIGM NFDSLILQSP EGAGAGDLDD FLNENDGRFQ MTAQRKTGDV
IPVEVSLTVS KSDGNQVLVS YVRDISHRLQ AEEELRRARD DALAGEQAKD RLLTVMSHEM
RTPLTGILGS LDVLEGLTPS AEQQRYLQAM RVSGELLLHH VNDVLQLSRL ESGAEADAPI
RFDLDELVRG IGESQQANAA RNNNDLSVFC SLGAETGVEG HCRYVQQVLL NLIGNALKFT
QDGAVSVDVM RTEGDLVEFS VADTGKGIAA EDLERIFDEF TMVDPNYNRG CEGTGLGLAI
SRRLARLMGG EITCESEPGE GSLFSFTIPL PPVALEQGKP VFAADAPTRQ QRLLVIEDND
INRLLLETML NDMGHEVVSV NGGARAIEEI RTHRFDLIIS DISMPDIDGM EVLRRVRAEQ
LANDTDIVAL TAHAARDDHE RILAAGFAEV LTKPIDRAAL AEMVLRRSAA DAAAPIPAQY
PGESDISQFV AAVGPEKARH FLAEFRDDVR ALREALTQSV ELTDQHRKEA HRLAGSAAVL
GLATLRSSML EIEQANTNAL PELAPLQDAW GNAEKVLAIH VAS