Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0941 |
Symbol | prfA |
ID | 4077335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1003744 |
End bp | 1004796 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638006244 |
Product | peptide chain release factor 1 |
Protein accession | YP_612936 |
Protein GI | 99080782 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0216] Protein chain release factor A |
TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.301393 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCCG AAGACCGGCT GCAACAGATT CTGCAACGCT ACCAGTACCT CGAGGCCGCG ATGGCGGATG GGGCAGGGGG TGATATCGCC AAGCTGGCCA AGGAATATTC CGACCTGCGC CCGGTGGTGG AGCAGATCAG CGCCTATCAG CAGCTGTTGA GCGATCTGGC CGAGGCCGAA GAAATGCTGG CCGACCCGGA CATGAAGGCG CTCGCAGAGG AAGAGATCCC GACCCTGAAG GCCGCACTGC CGCAGGCAGA GCATGCGCTG CAACTCGCGC TTTTGCCCAA GGATGAGGCC GACAGCCGAG CCGCCATTCT CGAGATCCGA CCCGGCACGG GCGGTGACGA GGCGGCGCTC TTTGCTGCGG ATCTCTATCG CATGTACAGC CGCTATGCGG AGACGCAGGG CTGGAAAGTG GATGTCATCG AAGAACAGGC CTCCGAGCTC GGCGGGCTCA AGGAACTGGT GGCGCGGATC AATGGCGACG GGGTTTTCGC GCGGCTCAAG TATGAAAGCG GCGTGCATCG GGTCCAGCGG GTGCCCGTGA CCGAGAGCGG CGGGCGCATC CACACCTCTG CGGCGACAGT GGCGGTGCTG CCAGAGGCCG AGGATGTGGA CATCAAGATC GACGCAAACG ATCTGCGCAT CGACACCATG CGGGCCTCGG GCGCGGGGGG GCAGCACGTC AACACCACCG ACTCGGCGGT GCGGATCACC CACCTGCCGA CCGGGCTGGT GGTCACCAGT TCGGAAAAAT CCCAGCACCG AAACCGCGAG ATCGCAATGC AGGTGCTGAA GACCCGGCTC TATGACCTTG AACGCCAGCG GATCGACACG GAACGCTCTG CGGATCGGGC TTCTCAGGTG GGGTCGGGAG ATCGTTCGGA ACGTATCCGG ACCTATAACT TCCCGCAGGG GCGGATGTCG GACCACCGGA TCAACCTCAC GCTTTATAAG CTCGATCAGA TCATGGGCGG CGACTTGGAT GAAATCATTG ACGCGCTGAT ATCCGAGCAT CAGGCGAAGC TCCTGGCGGA GATGGGGCAA TGA
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Protein sequence | MIPEDRLQQI LQRYQYLEAA MADGAGGDIA KLAKEYSDLR PVVEQISAYQ QLLSDLAEAE EMLADPDMKA LAEEEIPTLK AALPQAEHAL QLALLPKDEA DSRAAILEIR PGTGGDEAAL FAADLYRMYS RYAETQGWKV DVIEEQASEL GGLKELVARI NGDGVFARLK YESGVHRVQR VPVTESGGRI HTSAATVAVL PEAEDVDIKI DANDLRIDTM RASGAGGQHV NTTDSAVRIT HLPTGLVVTS SEKSQHRNRE IAMQVLKTRL YDLERQRIDT ERSADRASQV GSGDRSERIR TYNFPQGRMS DHRINLTLYK LDQIMGGDLD EIIDALISEH QAKLLAEMGQ
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