| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0921 |
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| Symbol | |
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| ID | 4077549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 982763 |
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| End bp | 983518 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638006224 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_612916 |
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| Protein GI | 99080762 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.718572 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCG CAACCACGCG CGCTGTGATC ACGGGCGGCG CATCCGGTCT CGGCGAGGCC
ACCGCCCGTC ATTTCCGTAA CGCTGGCGCT CAGGTCACAA TTCTGGATCG CGATGGTGAT
CGGGGTGCCA AGATCGCGGA GACAATCGGA GCCCATTTTG TCGAGACCGA TGTCACCAGC
GAAGAAAGCG TTGCGGCGGC GATGGCCTAT GCGGTCGACA AAATGGGCGG GTTGAGCGCA
GCGGTGAATT GCGCAGGCAT TGCTCATGCG ATCAAAACCG TCGGGCGGGA TGGTCCGCAT
CCGCTGGGCG CGTTTCAGAA AACCGTCGAC ATCAATCTGG TCGGCAGCTT CAACGTGGCG
CGCCTCGCCG CAGCAGAAAT CAGCAAGTCT ACGCCCGAGG CGGATGGCGC GCGCGGTGTC
ATCATCAACA CGGCTTCGAT CGCAGCCTTT GACGGCCAAA AGGGCCAGGC GGCCTATGCG
GCCTCCAAGG GCGGCATCGT GGGCATGACC CTGCCCATGG CCCGCGATCT GGCGTCCTCG
GGCATCCGCG TGATGGCCAT CGCACCGGGG ATCTTTATGA CGCCGATGCT GGCGGGACTG
CCAGAGGAGG CACAGGCGCA GCTGGCCGCT GATGTGCCAA ACCCGGCGCG TTTGGGCCAG
CCCGAGGAAT ACGCACGTCT GGCAGGGTTC ATTGTCGAAA TGGGATATCT CAACGGGGAG
GTCATTCGCC TCGATGGCGC GCTGCGGATG CGCTGA
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| Protein sequence | MKLATTRAVI TGGASGLGEA TARHFRNAGA QVTILDRDGD RGAKIAETIG AHFVETDVTS
EESVAAAMAY AVDKMGGLSA AVNCAGIAHA IKTVGRDGPH PLGAFQKTVD INLVGSFNVA
RLAAAEISKS TPEADGARGV IINTASIAAF DGQKGQAAYA ASKGGIVGMT LPMARDLASS
GIRVMAIAPG IFMTPMLAGL PEEAQAQLAA DVPNPARLGQ PEEYARLAGF IVEMGYLNGE
VIRLDGALRM R
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