| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0897 |
|---|
| Symbol | |
|---|
| ID | 4075994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 958089 |
|---|
| End bp | 958895 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638006199 |
|---|
| Product | exodeoxyribonuclease III |
|---|
| Protein accession | YP_612892 |
|---|
| Protein GI | 99080738 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG CCAGTTTCAA CATCAACGGC ATCAAGGCCC GTGTGAACGC CCTGACCGAC
TGGCTCGACG AGGCCCAGCC CGATGTGGCA GTGCTGCAGG AAATCAAATC GGTGGATGAG
GCGTTCCCGC GCGAGCTCTT CGAAGAGCGC GGCTACAACG TGGAAACCCA CGGCCAGAAA
AGCTTCAATG GTGTGGCGAT CCTGTCGAAA CTGCCGCTTG AGGATGTGCG CCGGGGCCTG
CCCGGGGACG AGAGCGACGA GCAGGCGCGC TGGATTGAAG CCACGGTGGT GGGCAAACAA
GCGCTCCGGA TCTGTGGTCT CTACCTGCCC AATGGCAACC CGGTCGAACT GAACGACGAC
GGCACGCCGG TTGAGGGTGG CAAATACGCC TATAAACTCG GTTGGATGGA ACGCCTGAAG
GCGCGCGCCG CGGAGTTGAT GGCAGAAGAG ATGCCTGCGC TGATGGCGGG GGATTACAAC
ATCATCCCGC AGGCCGAAGA TGCCAAGCGC CCCGAAGCCT GGCGGGAGGA TGCACTGCAC
CGCCCAGAGA GCCGCGCCGC CTTCCAGCGC ATTGTGAACC TTGGCTTCAC CGAAGCGTTT
CGTACGCGCA CACGCGGCCC GGGGCACTAT ACGTTCTGGG ACTACCAGGC GGGTGCATGG
AACCGGGACG ATGGCATCCG CATCGACCAT TTCCTGCTTA CACCGCAGGC GGCAGACCTG
CTGCGGGACT GCCAGATCGA CAAGGATATT CGCGGGCGCG AGAAACCCTC CGATCATGTC
CCAATCTGGG TGGATCTCGA TCTCTGA
|
|---|
| Protein sequence | MKIASFNING IKARVNALTD WLDEAQPDVA VLQEIKSVDE AFPRELFEER GYNVETHGQK
SFNGVAILSK LPLEDVRRGL PGDESDEQAR WIEATVVGKQ ALRICGLYLP NGNPVELNDD
GTPVEGGKYA YKLGWMERLK ARAAELMAEE MPALMAGDYN IIPQAEDAKR PEAWREDALH
RPESRAAFQR IVNLGFTEAF RTRTRGPGHY TFWDYQAGAW NRDDGIRIDH FLLTPQAADL
LRDCQIDKDI RGREKPSDHV PIWVDLDL
|
|---|
| |