| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0880 |
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| Symbol | |
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| ID | 4076250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 938924 |
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| End bp | 941278 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006182 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_612875 |
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| Protein GI | 99080721 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.273094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATTCG GACTTGATGG CGTCGAAATC GGCCTAATCA TCGTCTTTCT CTGCCTCTTC
GGGGGCATTC TCTCGGGCTT TCCGGTGGCC TTTGCCATCG GGGGCGCCGG GGTCATCTCC
TTCGGGATCA TTGCCGCGCT CGACAGTGCG GGGCTTCTGA TTCACCAGGC CATTGACACC
TCCAGTCAGG CCTATCGAGA TATCGTCAGC TCCGGCGTGA AGCCGGATGT GATTTCCGTA
TTCCGATACC CGGACTTGCC AAGGATCGCA GAGCCTGTGT TCCCGCAGGG CTGGGAAGTT
GCGATGGACC GCAACGTCTC CTTCATCGTG AACCGGATCA ACGAGCGGGT TCTGGCCGGC
GCCTCCATCG AGACGCTGCT GGCAGTGCTG ATGTTCGTTC TGATGGGCAT CACGCTTGAA
CGCTCCAAGA TCGCAAACGA TCTTCTGACC ACCATGGCGC GTGTCTTTGG CCCGCTGCCG
GGCGGTCTGG CTGTGTCCAT CGTGGTTGTG GGCGCGTTTC TTGCGGCGTC CACCGGGATC
GTGGGCGCAA CGGTTGTGAC CATGGGGCTT CTGGCCCTGC CGACCATGCT GCGCAACAAC
TACTCGCCGG AACTGGCGAC AGGTGTGATT GCAGCCTCGG GGACGCTTGG TCAGATCATT
CCGCCCTCGA TCGTGATCGT TCTTCTGGGC ACGCTCGCAG GGGATCTCTA CTCCACCGCG
CAGGAAAACC GGGCGCAGGA AGCGGGCTGT ACGGATGCGC TGACGTATCT TGGCGAGCCT
GCGGTTGTGT CCGTGGGCAC ATTGTTCCAG GCGGCCTTGT TGCCGGGCAT CATGCTTGCG
CTTCTCTATG CGCTCTATGC CTTTGGCTAC GCGCTCCTTA ATCCGCACAA GGCTCCTGCC
GTGCAGATGG GTGCTGCCAA TGAAGAGCCG ATCACCCGCG CAGAAAGCCT CACATGGTTC
CTCGGCGTTC CGGCGGCTCT GATCGTTGGC ACGGTGCTCT TGAACAGCGT GAACCTCGTG
GGCAGCCAGA ACATCACCGT TTCGGCCTTC TCTGATGCGG GGCAAACCGC AAGCCTGCGC
ACCAACGTGG GCCCGGAGTG TCAGGCGGCG ATGATTGACC TGCATGGTCA AGAAGCCTGG
GATGCCGCCG TGGCTGAGCA GGTCGAGATC GATGCGGCGG GCGGCGTGGC TGAAGCCACC
AAGCTTTCTG AAGAAGAGCT GGCCCAGGCG CTGGAGCAGA AGATCGCCAA TGCGGCGCCC
ATCGGCACCG GTATTGCGAC CATCATCGTG CTTCTGGGGC TGACGCTGGC CGTGGGCCGG
GGCGTGGCGC CGTCGCGTGA TGCCAAGCCG TTGATCGTTG GTGCCATTGG TCTGTTGCTG
CTGGCGCTGA TTGATGTGAT CGCGATTGGA CCCACCACCT CGGCCTCGGC CACGGTGGCG
TGGATGCTGC TGCCTGTCCT GCTTGCGCTT TATGGCTGCA AGGAAGCGGC GGCGCGCTGT
GCCCGCAACG ATCTGATCCG GGTGGTCTTC CCGCCGCTGG TTCTGATCGT GGCGGTGCTG
GGCTCGATCC TGGGTGGGAT CACCAACCCG ACGCCCGCTG CGGCGCTTGG GGCCGGTGGC
GCCATCATGC TCGCGGCCTA CCGTCGCCTG AAGGATGAGG GTCAATCCGG CAATATCATC
ATCTGGGCCA CCTTCGCGGT GATCCTGGCG ATCCTCACCG GTATGAACTT TGACCTTCGG
ATCAATCAGG ACGTGGTTCC CGCAGAAAGC TACGCGGCAT TCTTCTTTGC CTATTCGTGC
TATCTGTTTG CGCTCTTTGG CCTGCTCTAC GGGATCTGGG TGCTCTTCAA AGGCGGGGTG
ATGACACCGA TCGTGCGGGA AACCGCCAAG GTGACGTCGA TGGTCTTTAC CATCCTCATC
GGCTCGCAGC TGCTGAACCT GGTGGTGATC TCCTTTGGGG GCGAGCACTA TATCCAGCAG
TTCCTGAAGA GCTTTGACAA TGAGCTCACC GTGTTCCTCA TCGTGATGCT GGTGCTGTTC
ATCCTCGGGT TTGTGCTCGA CTTCCTGGAG ATCATCTACA TCGTGATCCC CATTGTCGGC
CCGGTGATCT ATGGCGGATC TTTTGATCCC AAATGGGTGA CGATCATGGT GGCTGTGAAC
CTGCAGACGT CCTTCCTCAC GCCGCCCTTT GGCTTTGCGC TATTCTATCT GCGCGGCGTG
GCGCCGAGGG AGGTCACGAC TGGCCATATC TACCGTGGTG TGTTGCCCTT CGTGTTGATC
CAGGTGCTTG GGCTGGCGAT CCTGTGGTTC TTCCCCTCGA TCGTGACCAT TGTACCGTCG
CTGATCCCGA ACTGA
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| Protein sequence | MLFGLDGVEI GLIIVFLCLF GGILSGFPVA FAIGGAGVIS FGIIAALDSA GLLIHQAIDT
SSQAYRDIVS SGVKPDVISV FRYPDLPRIA EPVFPQGWEV AMDRNVSFIV NRINERVLAG
ASIETLLAVL MFVLMGITLE RSKIANDLLT TMARVFGPLP GGLAVSIVVV GAFLAASTGI
VGATVVTMGL LALPTMLRNN YSPELATGVI AASGTLGQII PPSIVIVLLG TLAGDLYSTA
QENRAQEAGC TDALTYLGEP AVVSVGTLFQ AALLPGIMLA LLYALYAFGY ALLNPHKAPA
VQMGAANEEP ITRAESLTWF LGVPAALIVG TVLLNSVNLV GSQNITVSAF SDAGQTASLR
TNVGPECQAA MIDLHGQEAW DAAVAEQVEI DAAGGVAEAT KLSEEELAQA LEQKIANAAP
IGTGIATIIV LLGLTLAVGR GVAPSRDAKP LIVGAIGLLL LALIDVIAIG PTTSASATVA
WMLLPVLLAL YGCKEAAARC ARNDLIRVVF PPLVLIVAVL GSILGGITNP TPAAALGAGG
AIMLAAYRRL KDEGQSGNII IWATFAVILA ILTGMNFDLR INQDVVPAES YAAFFFAYSC
YLFALFGLLY GIWVLFKGGV MTPIVRETAK VTSMVFTILI GSQLLNLVVI SFGGEHYIQQ
FLKSFDNELT VFLIVMLVLF ILGFVLDFLE IIYIVIPIVG PVIYGGSFDP KWVTIMVAVN
LQTSFLTPPF GFALFYLRGV APREVTTGHI YRGVLPFVLI QVLGLAILWF FPSIVTIVPS
LIPN
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