| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0862 |
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| Symbol | ispG |
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| ID | 4076232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 915958 |
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| End bp | 917091 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006164 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_612857 |
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| Protein GI | 99080703 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0125129 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATGA ATCATATCCG CCCTTGGCGG AACATCGAAC GCCGCAAGAG CCGCCAGATC
CATGTGGGCA ATGTGCCCGT AGGGGGGGAT GCGCCAATTG CGGTGCAGAC CATGACCAAC
ACGTTGACCA CCGACATCAA AGGCACCATC GCACAGGTGC AGGCCGCCGC CGATGCGGGC
GCCGATATAG TGCGTGTCTC GGTCCCGGAC GAGGCCTCTG CCCGCGCGCT CAAGGAGATC
GTGCGGGAAA GCCCGGTGCC GATCGTGGCC GATATTCATT TCCACTACAA ACGTGGCATC
GAGGCCGCCG AGGCCGGTGC CGCCTGCCTG CGCATCAATC CCGGAAACAT CGGCGACGAA
AAACGCGTGG CCGAGGTGAT CAAGGCCGCC CGCGACCACA ATTGCTCGAT CCGTATTGGC
GTCAATGCTG GCAGCCTCGA AAAACACCTC CTCGAAAAAT ACGGCGAGCC TTGCCCGGAC
GCGATGGTCG AATCCGGCCT TGATCACATC AAGATCCTTC AGGACCACGA CTTTCATGAA
TTCAAGATCT CGGTCAAAGC CTCCGACGTC TTCATGTCTG CCGCCGCTTA TCAGATGCTT
GCGGATGCGA CCGACGCCCC CATCCACCTC GGCATCACCG AGGCTGGTGG GCTGATGTCC
GGCACGATCA AGTCTGCGAT CGGCCTCGGA CAGCTCTTGT GGATGGGCAT TGGCGACACC
CTGCGCGTAA GCCTTTCCGC CGATCCGGTT GAAGAGGTCA AAGTAGGCTT TGAGATCCTC
AAATCCCTCG GCCTGCGTCA CCGGGGCGTC AATATCATCT CCTGCCCGAG CTGCGCGCGT
CAGGGGTTTG ACGTTATCAA AACGGTCGAA ACCCTCGAAG AGCGCCTCGA ACACATCAAA
ACCCCCATGA GCCTCTCGAT CATCGGCTGC GTTGTGAATG GTCCGGGCGA GGCTTTGATG
ACCGATGTCG GCTTCACCGG TGGCGGCGCG GGCTCCGGCA TGGTGTATCT TGCGGGCAAG
GCCAGCCACA AGATGTCCAA CGACCAGATG ATCGATCACA TCGTCGAAGA GGTCGAGAAA
AAAGCCGCCG CTCTCGACGC GCAAGCGGCT GAGGACATGA AAGCGGCGGA ATAA
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| Protein sequence | MSMNHIRPWR NIERRKSRQI HVGNVPVGGD APIAVQTMTN TLTTDIKGTI AQVQAAADAG
ADIVRVSVPD EASARALKEI VRESPVPIVA DIHFHYKRGI EAAEAGAACL RINPGNIGDE
KRVAEVIKAA RDHNCSIRIG VNAGSLEKHL LEKYGEPCPD AMVESGLDHI KILQDHDFHE
FKISVKASDV FMSAAAYQML ADATDAPIHL GITEAGGLMS GTIKSAIGLG QLLWMGIGDT
LRVSLSADPV EEVKVGFEIL KSLGLRHRGV NIISCPSCAR QGFDVIKTVE TLEERLEHIK
TPMSLSIIGC VVNGPGEALM TDVGFTGGGA GSGMVYLAGK ASHKMSNDQM IDHIVEEVEK
KAAALDAQAA EDMKAAE
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