Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0852 |
Symbol | ugpC |
ID | 4076027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 904570 |
End bp | 905625 |
Gene Length | 1056 bp |
Protein Length | 351 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638006150 |
Product | glycerol-3-phosphate transporter ATP-binding subunit |
Protein accession | YP_612847 |
Protein GI | 99080693 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.520251 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAGCA TTACTCTCAA GGATCTTGTG AAATCCTACG GTGACACCGA GGTCCTCCAT CACATCGACG GTGAAATCAA CGATGGCGAG TTCATCGTGA TCGTCGGCCC GTCGGGCTGC GGTAAATCCA CCCTCCTGCG CATGATCGCA GGGCTTGAGA CCGTCACCTC TGGCGACATC AAGATCTGCG ACCGGGTGGT CAATGATCTG GAACCCGCCA ACCGCGACAT TGCGATGGTG TTTCAGAACT ACGCGCTTTA TCCGCATATG TCGGTGCGCG AAAACATGGG CTACGGTCTC AAGATCCGTG GCAACAGCAA GGCGGACATC AACCGCCGCG TCGAAGAAGC CGCCGAGATC CTCGAGATCG GGCAGTATCT CGACCGCAAG CCGCGCCAGC TCTCGGGCGG GCAGCGACAG CGTGTGGCGA TGGGACGCGC CATTGTGCGC GACCCGCAGG TGTTCCTGTT TGACGAACCC TTGTCGAACC TCGACGCCAA GCTACGGGTG CAGATGCGTC TTGAGATCCG CAAACTGCAG CAGCGCCTCG GCGTGACCTC GATCTATGTG ACTCACGATC AGGTCGAGGC CATGACGCTT GGCGATCGGC TGATGGTGCT CAATGGCGGC TATGTCGAAC AGTTCGGCAC CCCGATTGAG CTTTATGACC GTCCCGCGAC GCTCTTTGTG GCTGGGTTCA TCGGCTCACC TTCTATGAAC TTCCTGCCTG CTGAGATCGA CGCCGGCATG GTCACGCTCG AGAATGGAGC GCGGCTTGCG GGCGGCGGGT CGGCCGCGGG CAAGGTGACA TTGGGTTTGC GCCCGGAGCA TCTTGTGGCA GATGATAACG GCCCCGTTGA GGTCAACGTG CAACTCTGCG AGCAACTCGG CGCGATCACG CTTCTGCATG GCCACCTCAA TGGCACCGAT ACAGAATGCG TCGCCAGCAT GCCCGGTCAT GTAACAGCCG CCCCTGGCAC CCTGATGCGG TTTTCAATCG CGCCGGAGAA CCTGCATATG TTTGATCCCC AGACCGGCAA GCGGGTGGCG GAATGA
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Protein sequence | MASITLKDLV KSYGDTEVLH HIDGEINDGE FIVIVGPSGC GKSTLLRMIA GLETVTSGDI KICDRVVNDL EPANRDIAMV FQNYALYPHM SVRENMGYGL KIRGNSKADI NRRVEEAAEI LEIGQYLDRK PRQLSGGQRQ RVAMGRAIVR DPQVFLFDEP LSNLDAKLRV QMRLEIRKLQ QRLGVTSIYV THDQVEAMTL GDRLMVLNGG YVEQFGTPIE LYDRPATLFV AGFIGSPSMN FLPAEIDAGM VTLENGARLA GGGSAAGKVT LGLRPEHLVA DDNGPVEVNV QLCEQLGAIT LLHGHLNGTD TECVASMPGH VTAAPGTLMR FSIAPENLHM FDPQTGKRVA E
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