| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0843 |
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| Symbol | |
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| ID | 4076018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 889986 |
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| End bp | 894845 |
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| Gene Length | 4860 bp |
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| Protein Length | 1619 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006141 |
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| Product | OmpA/MotB |
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| Protein accession | YP_612838 |
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| Protein GI | 99080684 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.516542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCCGAA CTGCCCTATT CCGAGCCATA CTTTTGCTGA CCTTACCCCT ATCGTGGGGG
GGCTCCGTGC AGGCGCTGGA GTGCCGATAT TGCGAAGGGA AGGATCTTGG CGCATTGATC
GAGCTGTCCG TCTCGCGCGA CAGTGGCGCC TTGCGGGCGC AGATCCGGGG CTGGATTGCC
GAGAAACACC CCGATACCCC GGCTGGGTAT GTGGCGCGGG CCTGGGCGTT GGATCAGAGC
GGCGGGGATC TCAAAGACGT CGAACAACTT TACAAAGAGG GCATCAGGCG CGACCCCTCG
CTCGGTCTTG GTTTTACCAA CCTCGGCTAC ACGCTTGAGC GCCAGAAACG CTATGAAGAG
GCATTCGACT ACTACTTGGA AGGGGCCAAA GCCTGGCCGC ATCACGCGTT TTTTGTGCAA
TACGCCTTTT TTAACCTCAA GAACCGTCAA GGCGAGGCGG CGGCGCTTGA TTGGCTTGCA
ACCTACGAAC GTACCGGGCC AGCGCAGGAT TGGGTCTATG ATTATGTGCG CGGGGTTCTG
GCACGCAGCA ACGGGGATCG CCGTGCGGCA GACCGCTACT TTGAGCAGGC CCTGCGCCGC
TCGACGCAGC CGGATGCTTT GACCGCATGG CTCGACAATC GTCTGCGCGT GCTGAGCGCG
GAGCGGGCCG ATCGCAATAC CCGTCTCAAT ACCATTCGTG AGGCAATCGA CTGGGCCAAT
ACCAACCGCA GCGATGGCGC GCTGCGCCAT ATCGGAAAGA TCCTTTGGGA AGATTTCAAC
CTGCCGCGGG ACGCCCATAG CCTGTTTCGT GCAGCCTATC AGATGAACCC ATCGCCCGAG
GCTGCGCATG ATGCCTTTGG TTCGATCGGC AATGACGACT TTGACGCGGG GATTGCGGTC
CTGAACCAGG GGCTTCGGGA TTTTCCCAAC AACTATCATG TCTTGATCGC CGCCAACTGG
GCGTGGAGCG AATTCAAGTT CGATCCCCAA AAGGCCGAGG GCTATGGGAT GCGCGCGATC
GAGATGGCGC CAACGCAGGG GGAGTTGGAC AATGCGATCA ACCAATATGC CCGCTTTGCC
AATGAATCCG CGCAATATGA CAAAGCAGTT CCGGTCTTTG AGAAATACCT CTCCTCGGTG
AATGGCAGGG CCTATCGCAA CATTCTGGGC GATTACGTCG ACAACCGTGT CCACGCGCGT
GATTTCGATC AGGCCAACCG GCTCTTGCAG CGCGCCAAGG ACTATGGCGG CTTTTCGGAA
AACTGGATTG CGGGGCGCGA GAACCGTATC CGAAATGCGT TGCGGCTTCA GGGGCAGCGG
GATCGCTTTT TTGCAGAGAA TCCCTTTCTC AAGGACTGGG AGCAGCGCTT TGGCGACAGC
TTGCGTGTGA CGGTGGAGTT CGCCACCGGA AAAGCGGATA TTCGCGAGGC AGGCCTTGGT
GTGCTGCGCG AGGCCGCCGA TGCGCTGAAA GCGCGCGGTG CAGAGAACTA CGTATTTCTC
ATTGAGGGCC ATACCGACAG CACCGGCAGC GACAAGATCA ACCTGCCGCT GAGCGACGCA
CGCGCCAAAT CGGTTGAGCG CTATTTTGTC GAGAATGCGG GCATTGCGCC GGAGCGGTTG
CAAACCGTTG GATATGGTCC GCGCATCCCG CTTGCGACCA ACGCGACAGA GGGCGGCAAG
CAGATCAACC GTCGGGTTGA AATCCGTCCC TACGGCAATA TCTCGGCGCC GCAGATCTCG
ACCTCAGGCT GGCTTGATGC GCGGTCGCTT ACGCTGAGCC CGGATGGCCG GTTTGCAGTG
ACCGGCAATA CGCCGGCACA GGTCTGGGAC CTGGAACGCA TGCTTCGGGT TCACCAGCTG
CCTATTGGTG GCAGCTCGCG CGAAATCTCG CCCAATGGGC GCTATATCGC GGTCAAATCG
TCCTTTGTCG GGGTGACGGG GGTCACGGAC AATCTGCTTT ATATCTACGA TATGCGCACC
GGGCTCATGC ACAGCCAATT GCCCAACGCG CTCGAGATTG ATGAAATCTC CTGGTCACCC
TTTTCGGATG CGGTGGCCTT TAGTGATCGC AACGGCTACC TGCGGGTCTA TGACATGGCC
ACGCGCCAGT TTCGCGCGGT CACCAAGATG GGCACCATTC GGGGATCCGA GCAAATCATC
TGGACCGGGG ATGGCGCGCA TATCGTGACC AAGTCGCCGC GCACGTCAAC GGCGGTGGTC
CGCGATGCGC AATCGTTGCG GCCCGTCACC ACCCTGCGCA ACGCGGGCCG CGTGCATGGG
TTCGCGAACA CACCGGATGG GAAGTATCTG GTGGGCATGA ACAACAGTTA TGAGCTGATC
GTCTGGGCAA CTGCAGATTG GCGCGAGGTC GCGCGCAAGC GGATGCCTGC GATGACTTTC
AATCTCATTG CGCATCCCAC AGAGCCCAAG GTTATGATCG CCGATACCTT CACCAACACC
ACCCGGCTGG CGCTCGTGGA TGTGCCGAGC CTCAAGGTGA CCGCCACATT TGAGGGCGAC
CCGGAAAAGA TTCACTATGG TGGCTTCACG CCGGACGGGC AGCATTACGT CACTACGCTG
GATGATCAGA TTGTCTATCT CGACACCCAG AACCTGCGTG TTGATCAACG CAAGGACGGC
GCGGCGCACA AGGGCCGTGG CCTCACCATG GTGCCCTCAC AGGATCTGGT GCTCTCACGT
GACAGCGAAG GCACAAGCGT CTGGAACATC AAGACCGGCC GCCGCGTGCA CCGGATCGAA
GGGGAGGTAT ACCAGACCTG GAAGCCGCTC AGTGCGGATG GCTCGGTTCT GTTTACGTTC
GACGAAGATG GGCGGATGCT GCGCTTTGAC ACCACCACCT TCCGCAGCGA GGTGGTGAAG
CAGATCGACG GCACGCCCTA CAGCATGCGT GAAAACGACA CCCACATTGC TGTGGGGACC
GTGCCGCAAG GGGAGGGGCC GTTCCAGCGC CCGGTCTCCA ACATCTATGT GATCGAGAAG
GCAACGCTCA ATGTGGTGAT GCAGAAGCGC TTTGACATCG TGTCAGAGCC TGTGCGCTAC
AATGATATCT ATGATCCGGC CGTCTATGTC CGCCTGTCGG ACGATGGCAA GCTGGCGGTG
ACCTCGTCCT GGATGGCTGG GTTCAAGCAG GGCACCACCA ATGGCCGCGT GGTCACCATC
TATGATCCCC AGCGCAACAG CGAAGTGACC AGTTTTCAGG CGGAGGCGCG GTTCTTCCAG
ATGGACTGGG CCGAGGGGGG CGAGGCGCTC AAGTTCCGAG GCAAGGGCCG CTGGTATTTG
CATGATCCCA ACACTGGCAA GAACACGGGC CGCGAGACAC CCAGTGCCAA TTACGAAATC
GCGCTTGCCG ACGGCCGTAC GCTGGAGTGG TTCTGGGATC ATGTGGCGCT CGACGGCAAG
GAGCTGACCT TTCCGCATAA CCTGCGCCAT CTGGAAACCC ACGAAGATCG CAATCTGGCA
ATCGGTCTCA CCACGGGCAA CGAGCTGATC TTTATTGATC TGAACCAAAT GCAACAGGCG
CTGACCATTG CACCGCGCAA GAACGGCGAA TGGATCGCCT ATACCCCGGA CGGGCGCTAC
ACAGCGTCGC TGGCGGGCAC CGAGGATGTC TATTGGTCAC TTGGTGACAA CTACCTTCCG
TTCTCGGCGC TTTCGGAGAA CTATGAGCGC CCCGGCCTGA TCCGCAACCT GTTGGAGGCC
ATCGCTCAGG GCGAGGCGCT GCCGGATGAT GGTGTGGACG TGGATGCCGA TGTGTTTGAG
GCGCCCTATG CGGTCCGATT GATCTCGCCT CAGCGCAGCA CGACAGAGGA AGAGACCTTT
GTGGTCGAAC TTGAGGTGGT CAAGGACAGT GTGGACCTCG CAGACCCCGA GATCGAATAT
ACGCTCAACG GGCGCCGGGT TCTGAAATCT CGCGGGTTTG AGGAAGAGGC GTTCTTTGAC
GGGCAGGAGA CCGTGGGTTT CAGTCGTCGC TTTGACCTCA ATCCGGGTCG CAACGTGATC
GAGGCCTCGC TGGTATGGCG CGATGCGCGC ATCCAGACGC AGACGCTCGA AATCATGCGC
GAAGGCGGCG AGGCCCCGGA CGAGAAACCC TCTGGCCAAA CGCTCTGGTT CTTTGGGGTT
GGTGTCTCGG ACTACGAACG CTCAAGCCAG AACCTCAACT TTGCCGACCG CGACGCAACC
GAGCTGGCCA AGCTGATGGA AGCGCAGGAG GGCAGGCTGT TTAACAGGGT CGAGACCAAG
GTTCTGACCG ACGCCGAGGC CACAGAACGC AACGTCCGTA TCCAGATGAA CGAGTTTCTC
GATCAATCCT CAGATGATGA TGTCGTGGTG CTGTTTCTGG CCGGGCATGG CGTGGTCGAC
GAGGAGCAGG AGCTCTACTT CATGACCCAC GAGGGCGATT TGGCCAAACC CTATACCGGC
ATGAGCGTGG ACCGGTTCCG CGACTACCTC GAGAACCGCC CGCTCAATCA GAATGCGCTG
ATGTTGCTCG ACATCTGCCA CTCTGGCGCG GGCAGCGAGC GGGTGGTGGC CGAGGATGCG
GTGCAAAACC TCACAAAGGG CACAGGTGCC GTAGTGTTTG CCTCTTCCTC CGGCTCAGAG
CTCAGCTTTG AAGACGAGAG CTTTGGCGGC GGACACGGCG CCTTTACGGC GGCACTTCTC
GAGGGGCTGC GTGGTCTTGC AGACAACCGT GTCGGGGATC GTAACGGGTT CAATTCTCTG
CAGGAACTGG TGCTGTTTAC CTCCTCGCGG GTGCCGGAGC TGACCGAGGG CCAGCAACGC
CCACAGATCC CGGCGCTTTC GCTCAACGTG GACTATCCGC TGAGTGTTGC GACAAATTGA
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| Protein sequence | MIRTALFRAI LLLTLPLSWG GSVQALECRY CEGKDLGALI ELSVSRDSGA LRAQIRGWIA
EKHPDTPAGY VARAWALDQS GGDLKDVEQL YKEGIRRDPS LGLGFTNLGY TLERQKRYEE
AFDYYLEGAK AWPHHAFFVQ YAFFNLKNRQ GEAAALDWLA TYERTGPAQD WVYDYVRGVL
ARSNGDRRAA DRYFEQALRR STQPDALTAW LDNRLRVLSA ERADRNTRLN TIREAIDWAN
TNRSDGALRH IGKILWEDFN LPRDAHSLFR AAYQMNPSPE AAHDAFGSIG NDDFDAGIAV
LNQGLRDFPN NYHVLIAANW AWSEFKFDPQ KAEGYGMRAI EMAPTQGELD NAINQYARFA
NESAQYDKAV PVFEKYLSSV NGRAYRNILG DYVDNRVHAR DFDQANRLLQ RAKDYGGFSE
NWIAGRENRI RNALRLQGQR DRFFAENPFL KDWEQRFGDS LRVTVEFATG KADIREAGLG
VLREAADALK ARGAENYVFL IEGHTDSTGS DKINLPLSDA RAKSVERYFV ENAGIAPERL
QTVGYGPRIP LATNATEGGK QINRRVEIRP YGNISAPQIS TSGWLDARSL TLSPDGRFAV
TGNTPAQVWD LERMLRVHQL PIGGSSREIS PNGRYIAVKS SFVGVTGVTD NLLYIYDMRT
GLMHSQLPNA LEIDEISWSP FSDAVAFSDR NGYLRVYDMA TRQFRAVTKM GTIRGSEQII
WTGDGAHIVT KSPRTSTAVV RDAQSLRPVT TLRNAGRVHG FANTPDGKYL VGMNNSYELI
VWATADWREV ARKRMPAMTF NLIAHPTEPK VMIADTFTNT TRLALVDVPS LKVTATFEGD
PEKIHYGGFT PDGQHYVTTL DDQIVYLDTQ NLRVDQRKDG AAHKGRGLTM VPSQDLVLSR
DSEGTSVWNI KTGRRVHRIE GEVYQTWKPL SADGSVLFTF DEDGRMLRFD TTTFRSEVVK
QIDGTPYSMR ENDTHIAVGT VPQGEGPFQR PVSNIYVIEK ATLNVVMQKR FDIVSEPVRY
NDIYDPAVYV RLSDDGKLAV TSSWMAGFKQ GTTNGRVVTI YDPQRNSEVT SFQAEARFFQ
MDWAEGGEAL KFRGKGRWYL HDPNTGKNTG RETPSANYEI ALADGRTLEW FWDHVALDGK
ELTFPHNLRH LETHEDRNLA IGLTTGNELI FIDLNQMQQA LTIAPRKNGE WIAYTPDGRY
TASLAGTEDV YWSLGDNYLP FSALSENYER PGLIRNLLEA IAQGEALPDD GVDVDADVFE
APYAVRLISP QRSTTEEETF VVELEVVKDS VDLADPEIEY TLNGRRVLKS RGFEEEAFFD
GQETVGFSRR FDLNPGRNVI EASLVWRDAR IQTQTLEIMR EGGEAPDEKP SGQTLWFFGV
GVSDYERSSQ NLNFADRDAT ELAKLMEAQE GRLFNRVETK VLTDAEATER NVRIQMNEFL
DQSSDDDVVV LFLAGHGVVD EEQELYFMTH EGDLAKPYTG MSVDRFRDYL ENRPLNQNAL
MLLDICHSGA GSERVVAEDA VQNLTKGTGA VVFASSSGSE LSFEDESFGG GHGAFTAALL
EGLRGLADNR VGDRNGFNSL QELVLFTSSR VPELTEGQQR PQIPALSLNV DYPLSVATN
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