| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0838 |
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| Symbol | |
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| ID | 4077544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 882584 |
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| End bp | 883696 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638006136 |
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| Product | spermidine/putrescine ABC transporter ATP-binding subunit |
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| Protein accession | YP_612833 |
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| Protein GI | 99080679 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCCT TGCGGCCAAC AAGAGACGTT TGCATGATCA AAATTGATGG CCTAACCAAG
ATATTTGGCG AAGGCGCAGA GGCTTTCACC GCATTGGATG ATGTTTCTCT CACCATTCAA
TCCAATGAAT TTTTTACGCT CCTTGGTCCT TCCGGCTGCG GAAAAACAAC GCTGTTGCGC
ATGATTGCCG GGTTTCTGGA TCCCACTCGT GGTCAATTGA TGCTCGACGG CAAAGACCTT
TTGCGACACC CCCCGCATCA GCGCCCAGTC AATACGGTGT TTCAATCCTA TGCGCTGTTT
CCGCATATGA CCGTTTCAGA GAATATCGCC TTTGGACTTC AGATGCTTAA GCGACCGAAG
GCGGAAATTG CCGCAACCGT CTCGGAGATG CTGGAGCTGG TGCAGATGAC GGCGATGGCC
GACCGGAAAA CCGCGCAGAT TTCCGGTGGT CAGCAACAGC GCGTGGCGCT GGCCCGTGCC
CTCGCGCCGC GCCCCAAGGT CCTGTTGCTG GACGAGCCTC TCTCCGCACT CGACTTCAAA
CTGCGCAAGG AAATGCAGCT CGAACTCAAA CGGCTTCAGC ATGAAACCGG CATCACTTTT
GTCTTTGTCA CCCATGACCA GGAAGAAGCG CTGACGATGT CGGACCGCAT CGCGGTGATG
AATGCGGGCA CCATCCGGCA GATCGGCGGG CCGCGGGACA TCTACGATCA TCCGGCCGAG
CGGTTCGTGG CCGACTTCAT CGGCGACACC AATTTTCTGA AAGCCCAGAT GGTATCTTCC
ACCGAAAGCG GGGCCTTGGT CCGGCTCGCA TCGGGTGAGG AAATCCTGGC CAAGGCTCCG
GAAGGGGGCG CCCATTCCGC AGGACAGGCG GTGACATTGG CGGTGCGCCC TGAACATGCG
AGGCTTTGCG AACGTACAGA CGCGCTGTTG ATCGGAACCT TGGACAACGT GGTCTATTTC
GGCACCGACA CCCACTATCA CGTCACAATG GAAGGGGGCG GCACTTTTAT CCTGCGGCGG
CAAAACCAGC CGGGACAAAC GCAGACCTTG GCGATCAATG ACACGGTGGG GGTGTGCTTT
GCGCCTGACA CCGCGCAGAT CCTGAAGGAT TGA
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| Protein sequence | MTSLRPTRDV CMIKIDGLTK IFGEGAEAFT ALDDVSLTIQ SNEFFTLLGP SGCGKTTLLR
MIAGFLDPTR GQLMLDGKDL LRHPPHQRPV NTVFQSYALF PHMTVSENIA FGLQMLKRPK
AEIAATVSEM LELVQMTAMA DRKTAQISGG QQQRVALARA LAPRPKVLLL DEPLSALDFK
LRKEMQLELK RLQHETGITF VFVTHDQEEA LTMSDRIAVM NAGTIRQIGG PRDIYDHPAE
RFVADFIGDT NFLKAQMVSS TESGALVRLA SGEEILAKAP EGGAHSAGQA VTLAVRPEHA
RLCERTDALL IGTLDNVVYF GTDTHYHVTM EGGGTFILRR QNQPGQTQTL AINDTVGVCF
APDTAQILKD
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