| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0836 |
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| Symbol | |
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| ID | 4077542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 880854 |
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| End bp | 881654 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638006134 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_612831 |
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| Protein GI | 99080677 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAAG GATTTGATGT TCGCCGCCAG ACGGGCTTCA CAGCCATCGC CATCGCCTGC
TTTGTGCTGC TGTACCTGCC GATTCTACTT CTAGTCGCCT ATTCCTTTAA CGCTGGCGAC
TCCATCGCAA TCTGGGAAGG GTTTTCCTGG CGCTGGTACG CGTCGGCCTG GGATAACGAA
CAGGTCAAGG ATGCCACGAT CCGCTCTCTG ATCCTTGCGA CCTGCGCGTC GGGTGTCGCA
ACCACCGCAG CGGTTCTAGC GGCACTGGCC ACCACCCGCA GCAAGCCCTG GCGCGGGCAG
ACCGTGGTCT TTGCAATGGT CAATCAACCG TTGATGGTGC CAGAGATCGT CACCGCGGTC
TCGCTCCTCA TTGTGTTTGC CAGCATCAAA TCCTTTACCG GCTATACCGG GCTTGGCTAC
CTGATCCTCG CACATTCGGC CTTTTGCATT CCCTTTGCCT ATATGCCGGT GCGTGCGCGA
TTGCAGGGCA TGGATCTGAG CCTCGAACAC GCGGGCGCTG ATCTGTATGG CACACCGTTT
CAGGTCTTTC GCCACATCAC CCTGCCCCAG CTCTGGCCTG GAATTCTCGC CGGAGCGATG
CTGGCCTTCG TGATCTCTCT TGATGACGTG GTGATCACCG AGTTCGTCAA ATCCGCCGGA
CAGGACACCT TGCCCACATA TATGCTGGGA CAATTGCGCC GTGTGGTAAC GCCCGAGATC
AACGCCATTT CCACCGCCCT ATTGGCGATC TCGGTCCTGA TGGTGACCGC TTTTTACTTT
GTGAACAAAG TCCGAAAATA A
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| Protein sequence | MSKGFDVRRQ TGFTAIAIAC FVLLYLPILL LVAYSFNAGD SIAIWEGFSW RWYASAWDNE
QVKDATIRSL ILATCASGVA TTAAVLAALA TTRSKPWRGQ TVVFAMVNQP LMVPEIVTAV
SLLIVFASIK SFTGYTGLGY LILAHSAFCI PFAYMPVRAR LQGMDLSLEH AGADLYGTPF
QVFRHITLPQ LWPGILAGAM LAFVISLDDV VITEFVKSAG QDTLPTYMLG QLRRVVTPEI
NAISTALLAI SVLMVTAFYF VNKVRK
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