| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0830 |
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| Symbol | |
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| ID | 4077536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 870579 |
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| End bp | 871763 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638006128 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_612825 |
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| Protein GI | 99080671 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00410023 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.375315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAAA ATGCACAAGC AGTTTCCAAG CCAACCTCTG CAAAACACTA CCTAGAAGAA
GAGCTTGATG CACTCTTCCA ACAGGATGCG GAGGCTTGGC GTTTTGTTCA GCAAGGGTCG
CTTGACGGGG TTTGGTACTG GGATCTTAAG CAGCCTGACA AAGAATGGAT GAGCCCCGAG
ATGTGGGCGC TATTTGGCAT AGATCCCACC ACAAAGCGTC ACGACCCGTC AGAGTGGCAG
GACATCATTT TCAAAGAAGA CCTCGAGGTT GCTCTCAAGA ATTTTGAAAA GCACTGCGCA
GATCCCAATC ACCCCTATGA TCAGATTGTG CGGTATCGTC ACGCCGATGG ATCGACGGTT
TGGGTCCGGT GTCGAGGCAT TGCTATCCGT GACGAAACAG GAAAACCCAT CCGTATGTTG
GGCGCGCACA ATGACCTGAC GGCGGTCAAA CTTGCTGAGG AAAGAGCAAA CACTGCCTGC
AGGGAAACTG CTGCTGCCAA TGAAGAACTG CGCAGCTTTG CGTATAGTAT TTCCCATGAT
CTCAAGTCCC CCACTAATAC AATGGACATG CTCCTGCGAG AGATCGCTAT TGCGGACGAT
GGTGGCATGT CAGAAGAACA GCGCGAGCTG CTGCATACGG CGCAAGAAAC GGCGAATAGA
ATGCGCAGCC TTGTTGATGA CATGCTGGAC TACACGCGGT TAATTGGCGA GGAGCCTGTG
TGGGAGAGCG TTTCGCTTTA CGATACCGGG ACGCGTGTTC GGGATATGCT GGGATCGCTC
GTGGCCGAGA CAGGTGCCAA AATTTCGATC GACGAAAACC TTCCCAATGT GTCAGGCAAC
CCCACCCAGT TGAGGGTATT ATTACAAAAC CTTATCGAGA ACGCCATCAA GTACCGCGAT
CCCTCGCGTC CGCCGGTTGT GGTTGTTTCT AAACTCCACG CTGCTGACAC GAATGAAACT
GGTTTTTCGG TAGCCGATAA CGGCTTGGGC ATAGCAGAGG GGCATCAAGA CCGTGTTTTC
GAGATGTTCA AACGTTTACA CCGCGAAGAT GAAGTTGCTG GGGCGGGTTT GGGTTTAACT
CTTTGCCGTC GCGTGGCGCT AAACCATGGT GGGGATATTC AAGTCTCCTC GAAGCTTGGC
CAAGGAACAA CTTTCACCGT ATCTTTTCCG GAGCGAAACA CATGA
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| Protein sequence | MTKNAQAVSK PTSAKHYLEE ELDALFQQDA EAWRFVQQGS LDGVWYWDLK QPDKEWMSPE
MWALFGIDPT TKRHDPSEWQ DIIFKEDLEV ALKNFEKHCA DPNHPYDQIV RYRHADGSTV
WVRCRGIAIR DETGKPIRML GAHNDLTAVK LAEERANTAC RETAAANEEL RSFAYSISHD
LKSPTNTMDM LLREIAIADD GGMSEEQREL LHTAQETANR MRSLVDDMLD YTRLIGEEPV
WESVSLYDTG TRVRDMLGSL VAETGAKISI DENLPNVSGN PTQLRVLLQN LIENAIKYRD
PSRPPVVVVS KLHAADTNET GFSVADNGLG IAEGHQDRVF EMFKRLHRED EVAGAGLGLT
LCRRVALNHG GDIQVSSKLG QGTTFTVSFP ERNT
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